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Comment: Comment: Differential Gene Expression
3.4 years ago by Pratik ★ 1.1k
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5.0k
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Comment: Comment: Differential Gene Expression
3.4 years ago by Pratik ★ 1.1k
1
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1
reply
5.0k
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Comment: Comment: Differential Gene Expression
3.4 years ago by Pratik ★ 1.1k
5
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3
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1.6k
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Is removing strand information when obtaining intergenic regions from GRanges necessary?
GenomicRanges methylation strand intergenic genic
updated 3.4 years ago by 8.9k • written 3.4 years ago by ★ 1.1k
4
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1
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5.0k
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Answer: Answer: Differential Gene Expression
3.4 years ago by Pratik ★ 1.1k
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0
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47k
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Comment: Comment: Get chromosome sizes from fasta file
3.4 years ago by Pratik ★ 1.1k
2
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1
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1.1k
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Answer: Answer: Internship in research
3.4 years ago by Pratik ★ 1.1k
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1
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3.5k
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Answer: Answer: FindMarkers for ClusterProfiler
3.4 years ago by Pratik ★ 1.1k
1
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1
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3.7k
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Comment: Comment: Tools for bulk RNA-seq celltype deconvolution
3.4 years ago by Pratik ★ 1.1k
0
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1
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1.5k
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Comment: Comment: How to plot/combine biological replicates on a genomic features plot for methyla
3.4 years ago by Pratik ★ 1.1k
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0
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1.3k
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Comment: Comment: What cut-offs to use for Genomic Features Pie Chart for Methylation Array Data?
3.4 years ago by Pratik ★ 1.1k
2
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3
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1.5k
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How to plot/combine biological replicates on a genomic features plot for methylated array?
array methylation beadchip plot features genomic
updated 3.4 years ago by ★ 3.0k • written 3.4 years ago by ★ 1.1k
3
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2
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1.3k
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What cut-offs to use for Genomic Features Pie Chart for Methylation Array Data?
beadchip array methylation
3.4 years ago by Pratik ★ 1.1k
0
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0
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39k
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Comment: Comment: How to embed known cell information into Seurat object? AddMetaData?
3.4 years ago by Pratik ★ 1.1k
1
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0
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1.4k
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Answer: Answer: ChEMBL ID to Ensembl ID
3.5 years ago by Pratik ★ 1.1k
0
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1
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5.3k
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Comment: Comment: Free to use bioinformatics servers & large memory
3.5 years ago by Pratik ★ 1.1k
1
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1
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5.3k
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Comment: Comment: Free to use bioinformatics servers & large memory
3.5 years ago by Pratik ★ 1.1k
0
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1
reply
5.3k
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Comment: Comment: Free to use bioinformatics servers & large memory
3.5 years ago by Pratik ★ 1.1k
0
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1
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1.2k
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Comment: Comment: How to create gene level data from a probe level data?
3.5 years ago by Pratik ★ 1.1k
0
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1
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1.4k
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Comment: Comment: How to normalize and transform RNA-seq data of different samples for PCA?
3.5 years ago by Pratik ★ 1.1k
7
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3
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1.4k
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How to normalize and transform RNA-seq data of different samples for PCA?
TMM PCA RNA-seq edgeR
updated 3.5 years ago by 88k • written 3.5 years ago by ★ 1.1k
0
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0
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1.8k
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Answer: Answer: Is there a way to do GO terms enrichment analysis and keep track of gene symbols
3.5 years ago by Pratik ★ 1.1k
1
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0
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2.4k
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Comment: Comment: extracting ensembl gene id or entrez gene id from a gene annotation file for BIN
3.5 years ago by Pratik ★ 1.1k
0
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1
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2.4k
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Comment: Comment: extracting ensembl gene id or entrez gene id from a gene annotation file for BIN
3.5 years ago by Pratik ★ 1.1k
1
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1
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1.8k
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What format should a dataframe be in to use the AddMetaData function in Seurat?
seurat R RNA-Seq rna-seq scRNA-seq
3.5 years ago by Pratik ★ 1.1k
1
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0
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1.8k
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Answer: Answer: What format should a dataframe be in to use the AddMetaData function in Seurat?
3.5 years ago by Pratik ★ 1.1k
9
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5
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14k
views
How to read a dataframe into Seurat for AddMetaData properly?
seurat rna-seq RNA-Seq R
3.5 years ago by Pratik ★ 1.1k
6
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0
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14k
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Answer: Answer: How to read a dataframe into Seurat for AddMetaData properly?
3.5 years ago by Pratik ★ 1.1k
1
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1
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7.2k
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Comment: Comment: How to create a signature matrix based on a given single cell RNA-seq data
3.6 years ago by Pratik ★ 1.1k
0
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0
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21k
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Comment: Comment: How do you generate TMM normalized counts using EdgeR?
3.6 years ago by Pratik ★ 1.1k
0
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0
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21k
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Comment: Comment: How do you generate TMM normalized counts using EdgeR?
3.6 years ago by Pratik ★ 1.1k
0
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0
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1.5k
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Comment: Comment: How to convert a STK alignment into CLUSTAL?
3.6 years ago by Pratik ★ 1.1k
49
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5
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21k
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6 follow
How do you generate TMM normalized counts using EdgeR?
R RNA-seq edgeR
updated 8 months ago by ▴ 70 • written 3.6 years ago by ★ 1.1k
0
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1
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1.5k
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Comment: Comment: How to convert a STK alignment into CLUSTAL?
3.6 years ago by Pratik ★ 1.1k
0
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0
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1.2k
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Comment: Comment: bgr files: change chromosome annotation
3.6 years ago by Pratik ★ 1.1k
2
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0
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4.2k
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Answer: Answer: GTF file how do I search for duplicates of Gene ID and print them out
3.6 years ago by Pratik ★ 1.1k
1
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1
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2.3k
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Comment: Comment: mapped reads (m aligned) is higher for a subset sample?
3.6 years ago by Pratik ★ 1.1k
2
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1
reply
13k
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Comment: Comment: Is there a way to download FASTq files from SRR IDs?
3.6 years ago by Pratik ★ 1.1k
0
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0
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2.3k
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Comment: Comment: mapped reads (m aligned) is higher for a subset sample?
3.6 years ago by Pratik ★ 1.1k
0
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0
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2.3k
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Comment: Comment: mapped reads (m aligned) is higher for a subset sample?
3.6 years ago by Pratik ★ 1.1k
0
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2
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2.3k
views
Comment: Comment: mapped reads (m aligned) is higher for a subset sample?
3.6 years ago by Pratik ★ 1.1k
0
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1
reply
2.3k
views
Comment: Comment: mapped reads (m aligned) is higher for a subset sample?
3.6 years ago by Pratik ★ 1.1k
9
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13
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2.3k
views
mapped reads (m aligned) is higher for a subset sample?
salmon fastqc multiqc RNA-seq
updated 3.6 years ago by 88k • written 3.6 years ago by ★ 1.1k
0
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0
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1.5k
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Comment: Comment: Up to date bulk RNA-seq Quality Control tools?
3.6 years ago by Pratik ★ 1.1k
0
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0
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1.5k
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Comment: Comment: Up to date bulk RNA-seq Quality Control tools?
3.6 years ago by Pratik ★ 1.1k
6
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4
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1.5k
views
Up to date bulk RNA-seq Quality Control tools?
QC RNA-seq
3.6 years ago by Pratik ★ 1.1k
1
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0
replies
825
views
Comment: Comment: Single cell clusters annotating to same cell-type
3.6 years ago by Pratik ★ 1.1k
1
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0
replies
1.1k
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Comment: Comment: How can I compare the similarities of two transcriptomes?
3.6 years ago by Pratik ★ 1.1k
0
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0
replies
998
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Comment: Comment: Cannot great a gene by gene matrix in Rstudio
3.6 years ago by Pratik ★ 1.1k
1
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1
reply
998
views
Answer: Answer: Cannot great a gene by gene matrix in Rstudio
3.6 years ago by Pratik ★ 1.1k
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