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Answer: Answer: GTF file how do I search for duplicates of Gene ID and print them out
3.6 years ago by Pratik ★ 1.1k
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1
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2.4k
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Comment: Comment: extracting ensembl gene id or entrez gene id from a gene annotation file for BIN
3.6 years ago by Pratik ★ 1.1k
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2
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4.2k
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Comment: Comment: GTF file how do I search for duplicates of Gene ID and print them out
3.6 years ago by Pratik ★ 1.1k
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2
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2.4k
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Comment: Comment: extracting ensemble gene id or entrez gene id from a gene annotation file for B
3.6 years ago by Pratik ★ 1.1k
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0
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1.5k
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Tutorial: How to: make Camellia sinensis var. sinensis (black tea) custom annotation files for BINGO Cytoscape
bingo cytoscape
3.6 years ago by Pratik ★ 1.1k
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3.0k
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Comment: Comment: How do I make a ComplexHeatmap from this dataframe?
3.6 years ago by Pratik ★ 1.1k
10
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10
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3.0k
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6 follow
How do I make a ComplexHeatmap from this dataframe?
scaling scale heatmap
3.6 years ago by Pratik ★ 1.1k
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3.0k
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Comment: Comment: How do I make a ComplexHeatmap from this dataframe?
3.6 years ago by Pratik ★ 1.1k
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0
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3.0k
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Comment: Comment: How do I make a ComplexHeatmap from this dataframe?
3.6 years ago by Pratik ★ 1.1k
0
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1
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3.0k
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Comment: Comment: How do I make a ComplexHeatmap from this dataframe?
3.6 years ago by Pratik ★ 1.1k
0
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0
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3.0k
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Comment: Comment: How do I make a ComplexHeatmap from this dataframe?
3.6 years ago by Pratik ★ 1.1k
1
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1
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2.4k
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Answer: Answer: extracting ensemble gene id or entrez gene id from a gene annotation file for B
3.6 years ago by Pratik ★ 1.1k
0
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1
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2.8k
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Answer: Answer: Spatial transcriptomics data
3.6 years ago by Pratik ★ 1.1k
2
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0
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20k
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Answer: Answer: How to convert bulk UniProt Id to GO terms/Ids?
3.6 years ago by Pratik ★ 1.1k
1
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1
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9.8k
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Answer: Answer: Seurat to Dataframe with ONLY counts, cells, and cluster labels?
3.6 years ago by Pratik ★ 1.1k
7
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7
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7.1k
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How to fix missing values error message after SCTransform (Seurat)?
Seurat R SCTransform
3.6 years ago by Pratik ★ 1.1k
2
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0
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7.1k
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Answer: Answer: How to fix missing values error message after SCTransform (Seurat)?
3.6 years ago by Pratik ★ 1.1k
0
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0
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7.1k
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Comment: Comment: How to fix missing values error message after SCTransform (Seurat)?
3.6 years ago by Pratik ★ 1.1k
0
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1
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7.1k
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Comment: Comment: How to fix missing values error message after SCTransform (Seurat)?
3.6 years ago by Pratik ★ 1.1k
0
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1
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7.1k
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Comment: Comment: How to fix missing values error message after SCTransform (Seurat)?
3.6 years ago by Pratik ★ 1.1k
0
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0
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2.7k
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Comment: Comment: How to interpret ScanPy scatter plots for QC filtering?
3.6 years ago by Pratik ★ 1.1k
4
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4
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2.7k
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How to interpret ScanPy scatter plots for QC filtering?
Python jupyter-lab ScanPy RNA-Seq scRNA-seq
3.6 years ago by Pratik ★ 1.1k
0
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0
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2.7k
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Comment: Comment: How to interpret ScanPy scatter plots for QC filtering?
3.6 years ago by Pratik ★ 1.1k
1
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1
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1.1k
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Answer: A: Single-cell RNAseq for glia
3.8 years ago by Pratik ★ 1.1k
0
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0
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566
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Database for signalling pathway agonists and antagonists?
database gene
3.8 years ago by Pratik ★ 1.1k
3
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2
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8.2k
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Answer: A: How to transform the deg gene list from seurat to a gene list input to clusterPr
3.9 years ago by Pratik ★ 1.1k
0
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1
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3.8k
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Comment: C: How do I use FindAllMarkers after making additional cluster assignments?
3.9 years ago by Pratik ★ 1.1k
4
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4
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3.8k
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How do I use FindAllMarkers after making additional cluster assignments?
Seurat R single cell-RNA seq scRNA-seq
3.9 years ago by Pratik ★ 1.1k
2
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1
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3.8k
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Answer: A: How do I use FindAllMarkers after making additional cluster assignments?
3.9 years ago by Pratik ★ 1.1k
5
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1
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17k
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Answer: A: How to use FindSubCluster in Seurat?
3.9 years ago by Pratik ★ 1.1k
0
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0
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17k
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Comment: C: How to use FindSubCluster in Seurat?
3.9 years ago by Pratik ★ 1.1k
3
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1
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1.2k
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Answer: A: What Phenotype databases do you recommend for searching genes related to disease
3.9 years ago by Pratik ★ 1.1k
0
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1
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1.2k
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Comment: C: Number of upregulated and downregulated genes from counts matrix
3.9 years ago by Pratik ★ 1.1k
1
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1
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2.1k
views
How to interpret highly variable genes plot in Scanpy?
python single-cell RNA Seq
updated 23 months ago by • 0 • written 3.9 years ago by ★ 1.1k
3
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0
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3.7k
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Answer: A: How to deal with single nucleus data in Seurat
3.9 years ago by Pratik ★ 1.1k
0
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0
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1.6k
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Comment: C: How to record Seurat DE analysis efficiently?
3.9 years ago by Pratik ★ 1.1k
0
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1
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1.6k
views
Comment: C: How to record Seurat DE analysis efficiently?
3.9 years ago by Pratik ★ 1.1k
1
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0
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1.6k
views
Answer: A: How to record Seurat DE analysis efficiently?
3.9 years ago by Pratik ★ 1.1k
6
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7
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1.6k
views
How to record Seurat DE analysis efficiently?
R RNA-Seq rna-seq
3.9 years ago by Pratik ★ 1.1k
0
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0
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1.6k
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Comment: C: How to record Seurat DE analysis efficiently?
3.9 years ago by Pratik ★ 1.1k
2
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3
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1.7k
views
What is the difference between a heatmap-dendrogram of a gene-gene correlation matrix made from one cluster versus multiple clusters?
scRNA-Seq Seurat RNA-Seq R rna-seq
4.1 years ago by Pratik ★ 1.1k
0
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1
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1.7k
views
Comment: C: What is the difference between a heatmap-dendrogram of a gene-gene correlation m
4.1 years ago by Pratik ★ 1.1k
9
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9
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2.1k
views
Is there a way to use multiple processors (parallelize) to create a heatmap for a large dataset?
parallel processing heatmap scRNA-seq
4.1 years ago by Pratik ★ 1.1k
3
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0
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2.1k
views
Answer: A: Is there a way to use multiple processors (parallelize) to create a heatmap for
4.1 years ago by Pratik ★ 1.1k
0
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0
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10k
views
Comment: C: How do I subset a Seurat object using variable features?
4.1 years ago by Pratik ★ 1.1k
3
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2
replies
10k
views
How do I subset a Seurat object using variable features?
seurat RNA-Seq scRNA-seq R
updated 4.1 years ago by ▴ 830 • written 4.1 years ago by ★ 1.1k
1
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0
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2.1k
views
Comment: C: Is there a way to use multiple processors (parallelize) to create a heatmap for
4.1 years ago by Pratik ★ 1.1k
1
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1
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2.1k
views
Comment: C: Is there a way to use multiple processors (parallelize) to create a heatmap for
4.1 years ago by Pratik ★ 1.1k
0
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1
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2.1k
views
Comment: C: Is there a way to use multiple processors (parallelize) to create a heatmap for
4.1 years ago by Pratik ★ 1.1k
0
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0
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2.1k
views
Comment: C: Is there a way to use multiple processors (parallelize) to create a heatmap for
4.1 years ago by Pratik ★ 1.1k
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