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Comment: C: about annotate transcriptome
updated 5.2 years ago by 44k • written 10.1 years ago by ▴ 980
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0
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8.0k
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Comment: C: Customize IGV coverage track in R
updated 5.2 years ago by 44k • written 10.6 years ago by ▴ 980
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1
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8.0k
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Comment: C: Customize IGV coverage track in R
updated 5.2 years ago by 44k • written 10.6 years ago by ▴ 980
0
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1
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8.0k
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Answer: A: Customize IGV coverage track in R
updated 5.2 years ago by 44k • written 10.6 years ago by ▴ 980
1
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2
replies
4.8k
views
Xenome Star Aligner
rnaseq
updated 5.4 years ago by 20 • written 10.7 years ago by ▴ 980
13
votes
5
replies
4.9k
views
Convert IMPUTE2 to VCF while keeping phase information
VCF phasing IMPUTE2 conversion
updated 2.4 years ago by 44k • written 9.0 years ago by ▴ 980
2
votes
3
replies
2.6k
views
Total RNA RNA-seq database
RNA-Seq Extraction protocol
updated 6.7 years ago by 20 • written 8.0 years ago by ▴ 980
3
votes
1
reply
4.1k
views
SOLID color-space RNAseq alignment
SOLID RNAseq fastq alignment color-space
updated 2.8 years ago by 44k • written 10.0 years ago by ▴ 980
3
votes
7
replies
7.0k
views
Any tools to quantify intron retention in RNAseq data?
R RNA-seq RNAseq intron retention
updated 3.3 years ago by 44k • written 10.6 years ago by ▴ 980
1
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1
reply
3.2k
views
Order of reads in FASTQ file
RNA-Seq FASTQ
updated 7.8 years ago by 20k • written 7.8 years ago by ▴ 980
0
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1
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2.8k
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Comment: C: ribosomal RNA contamination
7.9 years ago by lkmklsmn ▴ 980
3
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3
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2.8k
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ribosomal RNA contamination
RNAseq rRNA contamination
updated 7.9 years ago by 105k • written 7.9 years ago by ▴ 980
0
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0
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4.4k
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Comment: C: Ribosomal RNA in RNA-seq data
8.0 years ago by lkmklsmn ▴ 980
2
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2
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4.4k
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Ribosomal RNA in RNA-seq data
RNA-seq Mapping rRNA Ribosomal
8.0 years ago by lkmklsmn ▴ 980
10
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9
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12k
views
6 follow
How to convert IMPUTE2 to VCF format
IMPUTE2 VCF conversion
updated 2.2 years ago by 44k • written 9.4 years ago by ▴ 980
12
votes
6
replies
13k
views
Gsea Plot
r gene enrichment
updated 8.4 years ago by ▴ 850 • written 10.7 years ago by ▴ 980
4
votes
1
reply
11k
views
Answer: A: Kallisto New RNA-seq quantification method discussion
8.7 years ago by lkmklsmn ▴ 980
11
votes
1
reply
7.5k
views
IGV zoom into alignment
IGV rna-seq RNA-seq
updated 8.7 years ago by 13k • written 8.7 years ago by ▴ 980
2
votes
1
reply
3.7k
views
Answer: A: How to add a new column with consecutive integer number in a bed file?
8.7 years ago by lkmklsmn ▴ 980
7
votes
1
reply
5.4k
views
Download ICGC gene expression data
gene-expression ICGC cancer
updated 21 months ago by 44k • written 8.7 years ago by ▴ 980
1
vote
1
reply
2.2k
views
Allele Definitions Between Dbsnp And Illumina
illumina genotype dbsnp
updated 8.8 years ago by 20 • written 10.7 years ago by ▴ 980
4
votes
9
replies
4.6k
views
Problem Running Htseq
rnaseq htseq python bam alignment
updated 8.9 years ago by 20 • written 11.1 years ago by ▴ 980
8
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11
replies
6.3k
views
8 follow
Aggregating Gene Expression Across Rows
rnaseq gene expression
updated 8.9 years ago by ▴ 190 • written 10.8 years ago by ▴ 980
7
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1
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4.9k
views
Answer: A: Convert IMPUTE2 to VCF while keeping phase information
9.0 years ago by lkmklsmn ▴ 980
0
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0
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6.6k
views
Answer: A: Regeneration GTex Box plot
9.0 years ago by lkmklsmn ▴ 980
0
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0
replies
12k
views
Comment: Comment: How to convert IMPUTE2 to VCF format
updated 2.2 years ago by 44k • written 9.4 years ago by ▴ 980
5
votes
8
replies
9.6k
views
6 follow
featureCounts isoform vs gene summarization
featureCounts RNAseq
updated 2.9 years ago by 44k • written 10.1 years ago by ▴ 980
0
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0
replies
2.5k
views
Merging SNPs from multiple imputation runs
IMPUTE2 imputation vcftools
9.4 years ago by lkmklsmn ▴ 980
0
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1
reply
12k
views
Comment: Comment: How to convert IMPUTE2 to VCF format
updated 2.2 years ago by 44k • written 9.4 years ago by ▴ 980
0
votes
1
reply
10k
views
Comment: Comment: How to remove batch effect from RNA-seq data?
updated 2.1 years ago by 44k • written 9.4 years ago by ▴ 980
2
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0
replies
2.6k
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Comment: C: How to calculate FPKM from the reads mapped to two genomes
9.4 years ago by lkmklsmn ▴ 980
0
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0
replies
3.1k
views
Weights for dependent variable using limma voom
regression limma RNA-seq
updated 2.0 years ago by 44k • written 9.5 years ago by ▴ 980
3
votes
1
reply
44k
views
Answer: Answer: R programming: compare columns to column and get the mismatch
updated 22 months ago by 44k • written 9.6 years ago by ▴ 980
1
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1
reply
3.6k
views
Convert STAR sjdb to gtf
STAR RNAseq splice junctions gtf RNA-Seq
updated 9.8 years ago by 105k • written 9.8 years ago by ▴ 980
0
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1
reply
13k
views
Comment: C: Calculating GC content from BAM file by BED file
9.9 years ago by lkmklsmn ▴ 980
0
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0
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5.4k
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Comment: Comment: SNPs in LD-independent loci
updated 2.8 years ago by 44k • written 10.0 years ago by ▴ 980
0
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0
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5.9k
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Comment: Comment: convert SOLID color space to base-space
updated 2.8 years ago by 44k • written 10.0 years ago by ▴ 980
0
votes
1
reply
4.4k
views
Comment: C: problem about SHRiMP2 solving AB SOLID
updated 3.8 years ago by 44k • written 10.0 years ago by ▴ 980
1
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0
replies
6.7k
views
Answer: A: Fast Eqtl Analysis Tool
10.0 years ago by lkmklsmn ▴ 980
1
vote
2
replies
14k
views
Comment: Comment: Removing PCR duplicates from .fastq without .bam alignment
updated 2.8 years ago by 44k • written 10.1 years ago by ▴ 980
2
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0
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2.4k
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Answer: Answer: GWAS regions in CANCER
updated 2.8 years ago by 44k • written 10.1 years ago by ▴ 980
0
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0
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7.0k
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Comment: C: GO terms : Ensembl ID / enrichment analysis
10.1 years ago by lkmklsmn ▴ 980
3
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0
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7.6k
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Answer: Answer: GSEA with ranked list
updated 3.0 years ago by 44k • written 10.2 years ago by ▴ 980
0
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0
replies
2.8k
views
Comment: Comment: gene and disease nework
updated 3.0 years ago by 44k • written 10.2 years ago by ▴ 980
1
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2
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2.8k
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Answer: Answer: gene and disease nework
updated 3.0 years ago by 44k • written 10.3 years ago by ▴ 980
0
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1
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2.5k
views
Affymetrix HuGeneST_1.0 masking probes
masking Affymetrix microarray APT
updated 3.0 years ago by 44k • written 10.3 years ago by ▴ 980
0
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0
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2.5k
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Answer: Answer: Affymetrix HuGeneST_1.0 masking probes
updated 3.0 years ago by 44k • written 10.3 years ago by ▴ 980
0
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0
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5.8k
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Comment: C: Gostats hypergeometric test for kegg enrichment pathway non model organism
10.3 years ago by lkmklsmn ▴ 980
2
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1
reply
5.8k
views
Answer: Answer: Gostats hypergeometric test for kegg enrichment pathway non model organism
updated 3.1 years ago by 44k • written 10.3 years ago by ▴ 980
4
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0
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4.5k
views
Answer: Answer: Looking databases for experimentaly validated miRNA-target interaction
updated 3.0 years ago by 44k • written 10.3 years ago by ▴ 980
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