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779
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statistical question (different number of gene orthologs on database)
database statistics
updated 2.7 years ago by 10k • written 2.7 years ago by ▴ 140
0
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1
reply
1.2k
views
Comment: Comment: How to rearrange fasta headers
2.8 years ago by v.berriosfarias ▴ 140
2
votes
4
replies
1.2k
views
How to rearrange fasta headers
fasta R bash string
updated 2.8 years ago by 21k • written 2.8 years ago by ▴ 140
0
votes
0
replies
713
views
MMseqs2 with paired end reads?
protein-profiling mmseqs2
2.8 years ago by v.berriosfarias ▴ 140
0
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0
replies
1.3k
views
Comment: Comment: retrieving paired end sequencing data with fasts-dump
2.8 years ago by v.berriosfarias ▴ 140
0
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0
replies
1.3k
views
Comment: Comment: retrieving paired end sequencing data with fasts-dump
2.8 years ago by v.berriosfarias ▴ 140
3
votes
5
replies
1.3k
views
retrieving paired end sequencing data with fasts-dump
NCBI fastq sra-toolkit
updated 2.8 years ago by 102k • written 2.8 years ago by ▴ 140
0
votes
0
replies
435
views
How to perform a biplot having a genomic distance matrix and environmental metadata
PCoA ampvis2 R biplot vegan
2.8 years ago by v.berriosfarias ▴ 140
0
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0
replies
1.9k
views
Comment: Comment: how to create a custom database (GTDB) ?
3.0 years ago by v.berriosfarias ▴ 140
3
votes
3
replies
1.3k
views
retrieveing gene list from NCBI
NCBI gene perl
updated 3.1 years ago by 149k • written 3.1 years ago by ▴ 140
2
votes
3
replies
4.1k
views
Could NOT find ZLIB while running cmake
zlib cmake conda racon
updated 3.1 years ago by ★ 4.8k • written 3.1 years ago by ▴ 140
0
votes
0
replies
594
views
Pacbio and illumina assembly question
Pacbio assembly racon illumina
3.1 years ago by v.berriosfarias ▴ 140
0
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1
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1.7k
views
Comment: Comment: How to add taxonomic information for each fasta header ?
updated 3.1 years ago by 8.7k • written 3.1 years ago by ▴ 140
2
votes
4
replies
1.7k
views
How to add taxonomic information for each fasta header ?
awk taxonomy FASTA
updated 3.1 years ago by 8.7k • written 3.2 years ago by ▴ 140
0
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0
replies
4.6k
views
Comment: Comment: Difference between a bin and a MAG
3.2 years ago by v.berriosfarias ▴ 140
0
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1
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4.6k
views
Comment: Comment: Difference between a bin and a MAG
3.2 years ago by v.berriosfarias ▴ 140
1
vote
2
replies
1.9k
views
how to create a custom database (GTDB) ?
MAGs GTDB databases
3.0 years ago by v.berriosfarias ▴ 140
1
vote
1
reply
809
views
How to retrieve all the nucleotide sequences in fasta format of all 'nucleotide' hyperlinks from a specie accesion from NCBI?
ncbi fasta
updated 3.3 years ago by 149k • written 3.3 years ago by ▴ 140
1
vote
3
replies
2.5k
views
which sequence adapter trimming tool should i use for my illumina 101pb reads ?
cutadapt alignment seed illumina
updated 3.3 years ago by ▴ 60 • written 4.3 years ago by ▴ 140
0
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0
replies
2.1k
views
Comment: Comment: parsing gbk files (antismash result)
3.5 years ago by v.berriosfarias ▴ 140
1
vote
2
replies
2.1k
views
parsing gbk files (antismash result)
awk biopython gbk antismash bash
3.5 years ago by v.berriosfarias ▴ 140
5
votes
5
replies
2.2k
views
how to remove a substring for multiple file names?
string bash
2.0 years ago by v.berriosfarias ▴ 140
0
votes
0
replies
2.2k
views
Comment: Comment: how to remove a substring for multiple file names?
3.6 years ago by v.berriosfarias ▴ 140
0
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1
reply
3.0k
views
Comment: Comment: distance matrix as input in R clustering functions ?
3.7 years ago by v.berriosfarias ▴ 140
1
vote
2
replies
775
views
is there a proper way to choose clusters in hierarchical clustering?
Hierarchical-clustering dendogram R
updated 3.7 years ago by 3.3k • written 3.7 years ago by ▴ 140
5
votes
4
replies
3.0k
views
distance matrix as input in R clustering functions ?
k-medioids-genetic-distances-mash R Clustering
updated 3.7 years ago by 27k • written 3.7 years ago by ▴ 140
0
votes
0
replies
911
views
Comment: Comment: Viral taxonomic classification question
3.7 years ago by v.berriosfarias ▴ 140
0
votes
2
replies
911
views
Viral taxonomic classification question
taxonomic-classification viral-metagenomics
3.7 years ago by v.berriosfarias ▴ 140
4
votes
1
reply
631
views
Does anyone know if there is an implementation of overlaping kmeans algorithm in R ?
r partitional-clustering kmeans
updated 3.7 years ago by ★ 28k • written 3.7 years ago by ▴ 140
0
votes
1
reply
786
views
how to import multiple fastq files from NCBI without using fastq-dump?
curl wget multi-samples importing
updated 3.8 years ago by 149k • written 3.8 years ago by ▴ 140
0
votes
1
reply
5.4k
views
Comment: Comment: How to cat 2 paired end reads files together in one file using loops for multip
3.8 years ago by v.berriosfarias ▴ 140
0
votes
1
reply
5.4k
views
Comment: Comment: How to cat 2 paired end reads files together in one file using loops for multip
3.8 years ago by v.berriosfarias ▴ 140
0
votes
1
reply
1.6k
views
Maxbin2 usage for paired end reads
binning paired-end-reads
updated 3.6 years ago by • 0 • written 3.8 years ago by ▴ 140
0
votes
0
replies
552
views
should I scale a MASH matrix ?
scale MASH
3.8 years ago by v.berriosfarias ▴ 140
0
votes
0
replies
1.6k
views
Comment: Comment: making a PCA from MASH distance result
3.8 years ago by v.berriosfarias ▴ 140
0
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1
reply
13k
views
Comment: Comment: Installing perl modules on a conda environment produce changes out of the enviro
3.8 years ago by v.berriosfarias ▴ 140
9
votes
4
replies
13k
views
Installing perl modules on a conda environment produce changes out of the environment?
conda perl
updated 3.8 years ago by 8.8k • written 3.8 years ago by ▴ 140
2
votes
2
replies
1.6k
views
making a PCA from MASH distance result
MASH R PCA
3.8 years ago by v.berriosfarias ▴ 140
0
votes
0
replies
2.1k
views
Comment: Comment: Tools for hard trimming?
3.8 years ago by v.berriosfarias ▴ 140
1
vote
2
replies
1.3k
views
multiqc report, should I care for "Per Base Sequence Content" module if using metagenomic datasets?
fastqc multiqc
updated 3.8 years ago by 44k • written 3.8 years ago by ▴ 140
0
votes
2
replies
3.9k
views
Comment: Comment: How to extract sequences from fasta that have a certain length ?
3.9 years ago by v.berriosfarias ▴ 140
2
votes
4
replies
3.9k
views
How to extract sequences from fasta that have a certain length ?
minlength fasta
updated 3.9 years ago by 8.7k • written 3.9 years ago by ▴ 140
0
votes
0
replies
1.7k
views
Comment: Comment: BAM file's reference sequence IDs doesnt match contigs ID's
3.9 years ago by v.berriosfarias ▴ 140
0
votes
1
reply
1.7k
views
Comment: Comment: BAM file's reference sequence IDs doesnt match contigs ID's
3.9 years ago by v.berriosfarias ▴ 140
1
vote
4
replies
1.7k
views
BAM file's reference sequence IDs doesnt match contigs ID's
metagenomics alignment bam
updated 23 months ago by 44k • written 3.9 years ago by ▴ 140
0
votes
0
replies
1.5k
views
Comment: Comment: K-mer usage in metagenome assemblies
3.9 years ago by v.berriosfarias ▴ 140
4
votes
3
replies
1.5k
views
K-mer usage in metagenome assemblies
Assembly metagenomics k-mer
3.9 years ago by v.berriosfarias ▴ 140
0
votes
2
replies
1.8k
views
Comment: C: Filter contigs by size: Different output between quast report and python output
4.0 years ago by v.berriosfarias ▴ 140
0
votes
1
reply
1.8k
views
Comment: C: Filter contigs by size: Different output between quast report and python output
4.0 years ago by v.berriosfarias ▴ 140
1
vote
1
reply
953
views
On read sequencing libraries, the opposite strands are considered on the files? (and how are they handled on assembly?)
reads sequencing Assembly
4.0 years ago by v.berriosfarias ▴ 140
118 results • Page 2 of 3
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