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Answer: Answer: Using Samtools mpileup with Varscan
updated 2.0 years ago by 44k • written 9.3 years ago by 8.3k
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2.5k
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Answer: Answer: 450k Methylation Arrays chip design
updated 24 months ago by 44k • written 9.3 years ago by 8.3k
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2.0k
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Answer: Answer: Differential Methylation Interpretation
updated 24 months ago by 44k • written 9.3 years ago by 8.3k
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2
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2.0k
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Answer: Answer: limma: can a separate channel microarray analysis done with this setup
updated 24 months ago by 44k • written 9.3 years ago by 8.3k
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3.6k
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Comment: Comment: Want to Skip Annotation Step (in MutSig_preprocess)
updated 22 months ago by 44k • written 9.4 years ago by 8.3k
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6
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3.6k
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Want to Skip Annotation Step (in MutSig_preprocess)
MutSig mutation DNA-Seq
updated 22 months ago by 44k • written 9.6 years ago by 8.3k
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4.1k
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Comment: Comment: 48 Replicate RNA-Seq Study Points to Replicates Needed for DGE
updated 21 months ago by 44k • written 9.5 years ago by 8.3k
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2
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4.1k
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Answer: Answer: 48 Replicate RNA-Seq Study Points to Replicates Needed for DGE
updated 21 months ago by 44k • written 9.5 years ago by 8.3k
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1
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3.6k
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Answer: A: Want to Skip Annotation Step (in MutSig_preprocess)
9.5 years ago by Charles Warden 8.3k
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5.0k
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Answer: A: Microarray Time Series With No Replicates
9.5 years ago by Charles Warden 8.3k
3
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1
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4.6k
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Answer: Answer: TCGA Methylation Data CpG Islands
updated 2.3 years ago by 44k • written 9.5 years ago by 8.3k
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3.1k
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Comment: Comment: Tool to detect Copy Number Variations(CNV) using Single Read End Data
updated 2.4 years ago by 44k • written 9.6 years ago by 8.3k
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3.6k
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Comment: Comment: Want to Skip Annotation Step (in MutSig_preprocess)
updated 2.4 years ago by 44k • written 9.6 years ago by 8.3k
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0
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8.2k
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Answer: Answer: Programatically retrieving CLINVAR records, with the same detail level as it is
updated 2.4 years ago by 44k • written 9.6 years ago by 8.3k
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1
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2.3k
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Answer: Answer: Require review/comments/suggestions on 450k analysis college project
updated 2.4 years ago by 44k • written 9.6 years ago by 8.3k
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0
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2.6k
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Comment: C: criterion for filtering lncRNA
9.6 years ago by Charles Warden 8.3k
2
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0
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7.0k
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Answer: A: Skipping The Local Realignment Around The Indels And Rather Aligning The Mapped
9.6 years ago by Charles Warden 8.3k
0
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1
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2.3k
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Answer: Answer: Is there an informative subset of 450k methylation probes?
updated 2.4 years ago by 44k • written 9.6 years ago by 8.3k
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0
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6.0k
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Comment: Comment: Solution: Gatk Doesn't Recognize Karyotypic Ordering
updated 2.4 years ago by 44k • written 9.6 years ago by 8.3k
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0
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19k
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Comment: Comment: Is There Any Other Method For Isoform-Level Differential Expression Analysis Exc
updated 2.4 years ago by 44k • written 9.6 years ago by 8.3k
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2
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6.0k
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Forum: Solution: Gatk Doesn't Recognize Karyotypic Ordering
picard gatk hg19
updated 20 months ago by 44k • written 10.8 years ago by 8.3k
5
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7.2k
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Answer: Answer: Comparing microarray to RNA-seq data
updated 2.5 years ago by 44k • written 9.7 years ago by 8.3k
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1
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18k
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Comment: Comment: How To Plot Clustered Mutation Profiles Using Tcga Mutation Data
updated 2.5 years ago by 44k • written 9.7 years ago by 8.3k
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0
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12k
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Comment: Comment: What is your opinion on the network score of IPA (Ingenuity Pathway Analysis) an
updated 2.6 years ago by 44k • written 9.8 years ago by 8.3k
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0
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3.1k
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Comment: Comment: scatter plot tool
updated 2.6 years ago by 44k • written 9.8 years ago by 8.3k
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1
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6.3k
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Answer: Answer: Is there any easy way to replicate R packages between two machines?
updated 2.6 years ago by 44k • written 9.8 years ago by 8.3k
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1
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2.4k
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Answer: Answer: Validated microRNA target sequences
updated 2.6 years ago by 44k • written 9.8 years ago by 8.3k
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0
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4.0k
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Answer: Answer: GATK vs more traditional SNP and alignment tools
updated 2.6 years ago by 44k • written 9.8 years ago by 8.3k
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1
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2.4k
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Answer: Answer: RNA secondary structure prediction
updated 2.6 years ago by 44k • written 9.8 years ago by 8.3k
2
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0
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2.4k
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Answer: Answer: Illumina Gene expression array analysis
updated 2.6 years ago by 44k • written 9.8 years ago by 8.3k
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0
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5.9k
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Answer: Answer: Calling differential gene expression in Time series
updated 2.6 years ago by 44k • written 9.8 years ago by 8.3k
3
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1
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45k
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Answer: A: FPKM vs raw counts vs RPKM
9.9 years ago by Charles Warden 8.3k
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0
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6.3k
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Comment: Comment: Why different somatic mutation callers agree so poorly on tumor sample pairs?
updated 2.6 years ago by 44k • written 9.9 years ago by 8.3k
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0
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2.5k
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Comment: Comment: differentially expressed genes
updated 2.6 years ago by 44k • written 9.9 years ago by 8.3k
4
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1
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6.3k
views
Answer: Answer: Why different somatic mutation callers agree so poorly on tumor sample pairs?
updated 2.6 years ago by 44k • written 9.9 years ago by 8.3k
1
vote
1
reply
12k
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Answer: Answer: What is your opinion on the network score of IPA (Ingenuity Pathway Analysis) an
updated 2.6 years ago by 44k • written 9.9 years ago by 8.3k
0
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0
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8.5k
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Comment: Comment: Rna-Seq Time Course Data
updated 2.6 years ago by 44k • written 9.9 years ago by 8.3k
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0
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3.8k
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Answer: Answer: What causes this message in IGV?
updated 2.6 years ago by 44k • written 9.9 years ago by 8.3k
2
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0
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4.8k
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Answer: Answer: Estimate Absolute Expression Value From Microarray Data
updated 2.7 years ago by 44k • written 9.9 years ago by 8.3k
2
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0
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16k
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Answer: Answer: Web Based Interactive Resources To Learn Programming And/Or Bioinformatics
updated 2.7 years ago by 44k • written 9.9 years ago by 8.3k
1
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1
reply
2.5k
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Answer: Answer: Any tools to predict non-coding driver mutations
updated 2.7 years ago by 44k • written 9.9 years ago by 8.3k
1
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0
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6.6k
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Answer: Answer: Tool/Software That Predicts The Functional Impact Of Synonymous Mutations?
updated 2.7 years ago by 44k • written 9.9 years ago by 8.3k
0
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1
reply
11k
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Answer: Answer: How to convert Mauve (xmfa) in Mega, multifasta, phylip or nexus?
updated 2.7 years ago by 44k • written 9.9 years ago by 8.3k
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0
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3.5k
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Comment: Comment: Memory Allocation for VarScan
updated 2.7 years ago by 44k • written 10.0 years ago by 8.3k
2
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5
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3.5k
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Memory Allocation for VarScan
snp indel varscan java
updated 2.7 years ago by 44k • written 10.0 years ago by 8.3k
0
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1
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3.5k
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Answer: Answer: Memory Allocation for VarScan
updated 2.7 years ago by 44k • written 10.0 years ago by 8.3k
1
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0
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6.0k
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Comment: Comment: ClinVar download sources
updated 3.6 years ago by 44k • written 10.0 years ago by 8.3k
0
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0
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3.1k
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Answer: Answer: Differentially spliced genes between two samples - how to use FIRMA to do this?
updated 3.6 years ago by 44k • written 10.0 years ago by 8.3k
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1
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6.0k
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Answer: Answer: ClinVar download sources
updated 3.6 years ago by 44k • written 10.0 years ago by 8.3k
1
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0
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4.3k
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Answer: Answer: No significantly mutated genes in Mutsig
updated 2.8 years ago by 44k • written 10.1 years ago by 8.3k
1,057 results • Page 13 of 22
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