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2
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1
reply
673
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How to change the design DESeqDataSet to calculate log2foldChange in different way?
design DESeqDataSetFromMatrix condition DESeq2
2.3 years ago by Amr ▴ 180
2
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0
replies
673
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Answer: Answer: How to change the design DESeqDataSet to calculate log2foldChange in different w
2.3 years ago by Amr ▴ 180
0
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1
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1.5k
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Comment: Comment: What is the best way to visualize the enrichment plots together after obtaining
2.3 years ago by Amr ▴ 180
0
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3
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1.5k
views
What is the best way to visualize the enrichment plots together after obtaining them from GSEA report?
ES enrichment_plot GSEA
updated 2.3 years ago by ★ 2.0k • written 2.3 years ago by ▴ 180
0
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0
replies
1.6k
views
Comment: Comment: How to plot all enrichment plots from GSEA in one single plot in python or R?
updated 2.2 years ago by 44k • written 2.3 years ago by ▴ 180
0
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0
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1.2k
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Comment: Comment: How to add illustrative bar in ggplot2?
2.3 years ago by Amr ▴ 180
1
vote
1
reply
767
views
How to add color to specific groups of a boxplot in Python?
boxplot python pandas
updated 2.3 years ago by 11k • written 2.3 years ago by ▴ 180
1
vote
1
reply
982
views
Error in linear regression for multiple data-frames with matplotlib
linear_regression matplotlib
updated 2.3 years ago by 149k • written 2.3 years ago by ▴ 180
1
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0
replies
982
views
Answer: Answer: Error in linear regression for multiple data-frames with matplotlib
2.3 years ago by Amr ▴ 180
0
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0
replies
889
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Comment: Comment: How to change values on X-axis in matplotlib ?
2.3 years ago by Amr ▴ 180
1
vote
2
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889
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How to change values on X-axis in matplotlib ?
matplotlib python pandas
updated 2.3 years ago by 44k • written 2.3 years ago by ▴ 180
0
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1
reply
1.2k
views
Comment: Comment: How to add illustrative bar in ggplot2?
2.3 years ago by Amr ▴ 180
0
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1
reply
1.2k
views
Comment: Comment: How to add illustrative bar in ggplot2?
2.3 years ago by Amr ▴ 180
2
votes
6
replies
1.2k
views
How to add illustrative bar in ggplot2?
ggplot2 R
2.3 years ago by Amr ▴ 180
0
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1
reply
2.9k
views
Comment: Comment: R-studio freezes error
2.4 years ago by Amr ▴ 180
0
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1
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2.9k
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Comment: Comment: R-studio freezes error
2.4 years ago by Amr ▴ 180
0
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1
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2.9k
views
Comment: Comment: R-studio freezes error
2.4 years ago by Amr ▴ 180
2
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10
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2.9k
views
R-studio freezes error
RStudio offtopic
updated 2.3 years ago by 44k • written 2.4 years ago by ▴ 180
2
votes
1
reply
658
views
What are the differences between significance, effect and standard deviation upon producing mitch reports?
R significance Standard-Deviation mitch
updated 6 months ago by 44k • written 2.4 years ago by ▴ 180
2
votes
0
replies
658
views
Answer: Answer: What are the differences between significance, effect and standard deviation upo
2.4 years ago by Amr ▴ 180
2
votes
1
reply
545
views
mitch report inquiries
mitch R
2.4 years ago by Amr ▴ 180
2
votes
0
replies
545
views
Answer: Answer: mitch report inquiries
2.4 years ago by Amr ▴ 180
1
vote
3
replies
1.2k
views
How Wald test calculates p-values in DESeq2?
Wald p-value DESeq2
2.4 years ago by Amr ▴ 180
1
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0
replies
1.2k
views
Answer: Answer: How Wald test calculates p-values in DESeq2?
2.4 years ago by Amr ▴ 180
0
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0
replies
785
views
Comment: Comment: How to calculate effect size between two gene sets?
2.4 years ago by Amr ▴ 180
5
votes
2
replies
785
views
How to calculate effect size between two gene sets?
distance effectSize euclidean
updated 2.4 years ago by 149k • written 2.4 years ago by ▴ 180
2
votes
3
replies
843
views
Error in mitch in R
mitch symbols gene R
updated 2.4 years ago by 13k • written 2.4 years ago by ▴ 180
2
votes
0
replies
843
views
Answer: Answer: Error in mitch in R
updated 2.4 years ago by 13k • written 2.4 years ago by ▴ 180
6
votes
5
replies
3.3k
views
How to select rows which has NA in any column in the dataframe in R?
dataframe NA R
updated 2.4 years ago by 13k • written 2.4 years ago by ▴ 180
0
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0
replies
3.3k
views
Comment: Comment: How to select rows which has NA in any column in the dataframe in R?
2.4 years ago by Amr ▴ 180
0
votes
2
replies
725
views
Error in mitch reports in R
mitch R
updated 13 months ago by ★ 2.0k • written 2.4 years ago by ▴ 180
16
votes
8
replies
2.6k
views
6 follow
How to convert Ensemble Gene IDs to gene symbols or Entrez Gene IDs?
Gene Symbols mitch IDs
updated 2.4 years ago by 102k • written 2.4 years ago by ▴ 180
0
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0
replies
18k
views
Comment: Comment: How to update rlang in R?
2.4 years ago by Amr ▴ 180
0
votes
1
reply
18k
views
Comment: Comment: How to update rlang in R?
2.4 years ago by Amr ▴ 180
0
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1
reply
18k
views
Comment: Comment: How to update rlang in R?
2.4 years ago by Amr ▴ 180
1
vote
1
reply
18k
views
Comment: Comment: How to update rlang in R?
2.4 years ago by Amr ▴ 180
1
vote
8
replies
18k
views
How to update rlang in R?
rlang R
2.4 years ago by Amr ▴ 180
0
votes
0
replies
843
views
Comment: Comment: Error in mitch in R
2.4 years ago by Amr ▴ 180
0
votes
0
replies
922
views
Comment: Comment: How to take data from dataframe to put it in another dataframe in R?
2.4 years ago by Amr ▴ 180
0
votes
0
replies
922
views
Comment: Comment: How to take data from dataframe to put it in another dataframe in R?
2.4 years ago by Amr ▴ 180
4
votes
4
replies
922
views
How to take data from dataframe to put it in another dataframe in R?
dataframe R
2.4 years ago by Amr ▴ 180
5
votes
9
replies
2.1k
views
Convert Gene Ensemble IDs to Gene Symbols on R
Ensemble R Gene-Symbols biomart
updated 20 months ago by 44k • written 2.4 years ago by ▴ 180
0
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1
reply
2.1k
views
Comment: Comment: Convert Gene Ensemble IDs to Gene Symbols on R
2.4 years ago by Amr ▴ 180
0
votes
1
reply
2.1k
views
Comment: Comment: Convert Gene Ensemble IDs to Gene Symbols on R
2.4 years ago by Amr ▴ 180
1
vote
1
reply
2.1k
views
Comment: Comment: Convert Gene Ensemble IDs to Gene Symbols on R
updated 2.4 years ago by 149k • written 2.4 years ago by ▴ 180
0
votes
1
reply
588
views
Depending on which counts number, the genes are overexpressed either up or down regulated in GSEA ?
gene GSEA geneset
updated 2.4 years ago by ★ 1.8k • written 2.4 years ago by ▴ 180
7
votes
2
replies
10k
views
How to use biomart on R to convert Ensembl Gene IDs to Symbols?
IDs R biomart Ensembl Symbols
updated 2.4 years ago by ★ 2.4k • written 2.4 years ago by ▴ 180
2
votes
2
replies
819
views
Why the number of genes decreased after dds (DESeqDataSetFromMatrix)?
R DESeq2
updated 16 months ago by 44k • written 2.4 years ago by ▴ 180
0
votes
3
replies
841
views
Why it is recommended to run samples from all groups together while performing DESeq although the design variables are not used when estimating the s…
DESeq2 GSEA R DEG
updated 2.4 years ago by 102k • written 2.4 years ago by ▴ 180
0
votes
0
replies
841
views
Comment: Comment: Why it is recommended to run samples from all groups together while performing D
2.4 years ago by Amr ▴ 180
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