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0
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0
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257
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Missing NaNs in correlation matrix for fine-mapping
GWAS Finemapping plink
9 months ago by always_learning ★ 1.1k
0
votes
1
reply
660
views
Assistance Needed with Converting VCF File for BOLT-LMM Usage
BOLT-LMM PLINK IMPUTE GWAS dosage
updated 16 months ago by 11k • written 16 months ago by ★ 1.1k
24
votes
20
replies
28k
views
8 follow
Converting Gvcf Files Into Vcf
vcf
updated 2.2 years ago by ★ 9.5k • written 11.2 years ago by ★ 1.1k
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0
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2.9k
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Comment: Comment: RNAseq: units (TPM +0.001).
2.3 years ago by always_learning ★ 1.1k
0
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0
replies
402
views
uniformly processing TCGA data and Gtex data
RNASeq cancer edaseq RECOUNT3
updated 2.5 years ago by 85k • written 2.5 years ago by ★ 1.1k
1
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1
reply
3.5k
views
Difference between Cosmic Annotation from VEP and directly from COSMIC VCF.
VEP Annotation
updated 3.8 years ago by ▴ 100 • written 8.1 years ago by ★ 1.1k
1
vote
3
replies
4.2k
views
Gvcf Format From Illumina
illumina ngs
updated 3.8 years ago by 20 • written 11.2 years ago by ★ 1.1k
1
vote
1
reply
1.1k
views
Comment: C: Method to classify given sample into subtype
4.1 years ago by always_learning ★ 1.1k
0
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1
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1.2k
views
Comment: C: RNA Seq and Somatic Calls for the Cancer data
4.3 years ago by always_learning ★ 1.1k
0
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5
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1.2k
views
RNA Seq and Somatic Calls for the Cancer data
RNA-Seq somatic tumor
updated 4.3 years ago by 88k • written 4.3 years ago by ★ 1.1k
0
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0
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1.2k
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Comment: C: RNA Seq and Somatic Calls for the Cancer data
4.3 years ago by always_learning ★ 1.1k
0
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0
replies
7.5k
views
Comment: C: GISTIC input parameters.
4.3 years ago by always_learning ★ 1.1k
0
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0
replies
1.4k
views
Comment: C: low genomic inflation factor
4.4 years ago by always_learning ★ 1.1k
0
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1
reply
6.2k
views
Comment: C: genomic inflation factor calculation
4.4 years ago by always_learning ★ 1.1k
0
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1
reply
1.3k
views
GENE BURDEN TEST
EXOME GENE BURDEN
4.4 years ago by always_learning ★ 1.1k
1
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0
replies
66k
views
Answer: A: What Are The Most Common Stupid Mistakes In Bioinformatics?
updated 4.5 years ago by 44k • written 9.2 years ago by ★ 1.1k
0
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1
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3.3k
views
Comment: C: How to annotate structural variants in VCF with esv/nsv identifiers
4.8 years ago by always_learning ★ 1.1k
0
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0
replies
3.3k
views
Comment: C: How to annotate structural variants in VCF with esv/nsv identifiers
4.8 years ago by always_learning ★ 1.1k
0
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1
reply
3.3k
views
Answer: A: How to annotate structural variants in VCF with esv/nsv identifiers
4.8 years ago by always_learning ★ 1.1k
1
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0
replies
2.7k
views
Comment: C: Can Homozygous Snps Be Used To Construct A Phylogeny?
updated 4.9 years ago by 44k • written 11.1 years ago by ★ 1.1k
0
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0
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4.0k
views
Answer: A: TCGA database search
updated 5.0 years ago by 44k • written 8.9 years ago by ★ 1.1k
0
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1
reply
8.2k
views
Comment: C: GenomeStudio genotype format to VCF?
updated 5.0 years ago by 44k • written 9.0 years ago by ★ 1.1k
5
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2
replies
8.2k
views
Answer: A: extracting heterozygous snp from a vcf file
updated 5.0 years ago by 44k • written 9.0 years ago by ★ 1.1k
0
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0
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6.3k
views
Comment: C: PLINK .bim file shows chromosome 0 on Affymetrix chip
updated 5.0 years ago by 44k • written 9.0 years ago by ★ 1.1k
0
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1
reply
29k
views
Comment: A: Sift Or Polyphen
5.0 years ago by always_learning ★ 1.1k
0
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1
reply
29k
views
Comment: A: Sift Or Polyphen
5.0 years ago by always_learning ★ 1.1k
0
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1
reply
4.4k
views
Comment: C: Somatic indel calling with Pindel
5.0 years ago by always_learning ★ 1.1k
0
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0
replies
4.0k
views
Comment: C: How to convert maf file format to oncoPrint matrix (ComplexHeatmap package)?
5.1 years ago by always_learning ★ 1.1k
0
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0
replies
2.8k
views
Comment: C: TCGA TMB: What exome size to use?
5.2 years ago by always_learning ★ 1.1k
0
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1
reply
21k
views
Comment: C: How To Split A .Vcf.Gz File
updated 5.2 years ago by 44k • written 10.2 years ago by ★ 1.1k
0
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0
replies
8.1k
views
Comment: C: MeDip-seq data interpretation + analysis / MEDIPS, MACS2
5.4 years ago by always_learning ★ 1.1k
0
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1
reply
3.3k
views
Can Some One Explain These Gatk Unifiedgenotyper Commands And Difference In Terms Of Output Also
gatk variant ngs
updated 5.6 years ago by 20 • written 11.2 years ago by ★ 1.1k
0
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0
replies
7.2k
views
Comment: C: Using parallel with Mem
updated 5.7 years ago by 88k • written 10.6 years ago by ★ 1.1k
0
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1
reply
19k
views
Comment: C: Best tool for variant calling
5.7 years ago by always_learning ★ 1.1k
2
votes
6
replies
2.2k
views
VCFParseError: ploidy > 2 not supported
VCF GATK PLOIDY
updated 5.7 years ago by ▴ 50 • written 5.9 years ago by ★ 1.1k
0
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1
reply
19k
views
Comment: C: Best tool for variant calling
5.8 years ago by always_learning ★ 1.1k
0
votes
0
replies
9.3k
views
Comment: C: Installing Bwa On 32 Bit Unix Machine
updated 5.8 years ago by 44k • written 11.2 years ago by ★ 1.1k
0
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1
reply
9.3k
views
Comment: C: Installing Bwa On 32 Bit Unix Machine
updated 5.8 years ago by 44k • written 11.2 years ago by ★ 1.1k
0
votes
0
replies
4.8k
views
Comment: C: Illumina Read Quality
updated 5.8 years ago by 44k • written 11.2 years ago by ★ 1.1k
0
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1
reply
2.2k
views
Comment: C: VCFParseError: ploidy > 2 not supported
5.9 years ago by always_learning ★ 1.1k
0
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1
reply
2.2k
views
Comment: C: VCFParseError: ploidy > 2 not supported
5.9 years ago by always_learning ★ 1.1k
16
votes
12
replies
12k
views
7 follow
Annotation for SV and CNV
Annotation CNV SV
updated 6.2 years ago by 47k • written 8.5 years ago by ★ 1.1k
0
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0
replies
1.9k
views
Comment: C: AF comparison between two population.
6.2 years ago by always_learning ★ 1.1k
0
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0
replies
1.9k
views
Comment: C: AF comparison between two population.
6.2 years ago by always_learning ★ 1.1k
0
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0
replies
1.9k
views
Comment: C: AF comparison between two population.
6.2 years ago by always_learning ★ 1.1k
0
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1
reply
1.9k
views
Comment: C: AF comparison between two population.
6.2 years ago by always_learning ★ 1.1k
1
vote
7
replies
1.9k
views
AF comparison between two population.
R Statistical test AF
6.2 years ago by always_learning ★ 1.1k
0
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1
reply
6.5k
views
Comment: A: VCF file period symbol in the genotype
6.2 years ago by always_learning ★ 1.1k
0
votes
1
reply
5.6k
views
Comment: C: Subset VCF file by comparing CHROM,POS,REF and ALT
6.3 years ago by always_learning ★ 1.1k
0
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1
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5.6k
views
Comment: C: Subset VCF file by comparing CHROM,POS,REF and ALT
updated 6.3 years ago by 44k • written 6.3 years ago by ★ 1.1k
276 results • Page 1 of 6
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