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2
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Answer: Answer: What type of Bioinformatics analysis could I perform if I have DNA sequences of
updated 23 months ago by 44k • written 9.4 years ago by ★ 2.2k
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3
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Detection of fusion events of Retrotransposons and genes/lncRNA from RNA-seq data using available tools ?
Retrotransposons RNA-Seq Chimeric-Transcript
updated 23 months ago by 44k • written 9.4 years ago by ★ 2.2k
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Comment: C: p53 upregulated in cancer cell line
9.4 years ago by Manvendra Singh ★ 2.2k
1
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1
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4.8k
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Comment: Comment: RNA-seq batch effect due to sequencing platform
updated 2.1 years ago by 44k • written 9.5 years ago by ★ 2.2k
1
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2
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Answer: Answer: RNA-seq experiments, usually are made in parallel with the Ribosomal profiling e
updated 22 months ago by 44k • written 9.5 years ago by ★ 2.2k
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2.6k
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Comment: Comment: predicting protein binding regions within LncRNA
updated 2.4 years ago by 44k • written 9.6 years ago by ★ 2.2k
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1
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5.9k
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Comment: C: tRNA expression analysis from RNA-Seq
9.6 years ago by Manvendra Singh ★ 2.2k
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1
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2.6k
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Answer: Answer: Tophat error on using NONCODE database gtf file.
updated 2.4 years ago by 44k • written 9.6 years ago by ★ 2.2k
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Answer: A: Aligning Rna-Seq To Repetitive Line-1 Elements
9.6 years ago by Manvendra Singh ★ 2.2k
1
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0
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6.6k
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Answer: Answer: RNA-Seq analysis across different species
updated 2.4 years ago by 44k • written 9.6 years ago by ★ 2.2k
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Comment: Comment: Bam-files: How to know which reads are actual pairs?
updated 2.4 years ago by 44k • written 9.6 years ago by ★ 2.2k
4
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1
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2.3k
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Answer: Answer: regulatory regions discovery and alignment
updated 2.4 years ago by 44k • written 9.6 years ago by ★ 2.2k
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1
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2.6k
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Answer: A: predicting protein binding regions within LncRNA
9.6 years ago by Manvendra Singh ★ 2.2k
0
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1
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3.4k
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Comment: C: Bam-files: How to know which reads are actual pairs?
9.6 years ago by Manvendra Singh ★ 2.2k
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Answer: A: Help with a reading count command using HTSeq
9.6 years ago by Manvendra Singh ★ 2.2k
1
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0
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2.4k
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Comment: Comment: Microarray data analysis (median detection pvalue)
updated 2.4 years ago by 44k • written 9.6 years ago by ★ 2.2k
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Answer: A: retreive sequence gene
9.6 years ago by Manvendra Singh ★ 2.2k
2
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0
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2.4k
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Answer: Answer: Microarray data analysis (median detection pvalue)
updated 2.4 years ago by 44k • written 9.6 years ago by ★ 2.2k
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0
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Answer: Answer: Why cufflinks does not report raw read count anymore? Which version of it do rep
updated 2.4 years ago by 44k • written 9.6 years ago by ★ 2.2k
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Answer: A: Read alignment for ChIPseq
updated 3.7 years ago by 44k • written 9.6 years ago by ★ 2.2k
3
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0
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10.0k
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Answer: A: Chip-Seq - Peak caller for broad enrichment of histone modifications?
9.6 years ago by Manvendra Singh ★ 2.2k
1
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1
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4.2k
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Answer: Answer: z score transformation from signal intensities of raw microarray data
updated 2.4 years ago by 44k • written 9.6 years ago by ★ 2.2k
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1
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3.0k
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Comment: Comment: merge PE reads for Transcript De-Novo Assembly ??
updated 2.5 years ago by 44k • written 9.7 years ago by ★ 2.2k
1
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0
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1.9k
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Answer: Answer: Case and control in microarray/RNA-seq analysis
updated 2.5 years ago by 44k • written 9.7 years ago by ★ 2.2k
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0
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2.2k
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Comment: Comment: corresponding gene names for probeIDs
updated 2.5 years ago by 44k • written 9.7 years ago by ★ 2.2k
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1
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2.2k
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Answer: A: corresponding gene names for probeIDs
9.7 years ago by Manvendra Singh ★ 2.2k
1
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0
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3.6k
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Comment: Comment: Analyse Illumina Microarray data with lumi - read in data
updated 2.6 years ago by 44k • written 9.7 years ago by ★ 2.2k
0
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1
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15k
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Comment: C: Easiest way to compute RNA-Seq mapping stats (exons, introns, intergenic)?
9.8 years ago by Manvendra Singh ★ 2.2k
2
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1
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3.6k
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Answer: Answer: Analyse Illumina Microarray data with lumi - read in data
updated 2.6 years ago by 44k • written 9.8 years ago by ★ 2.2k
1
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0
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Comment: C: Tophat option -p
9.8 years ago by Manvendra Singh ★ 2.2k
3
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1
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2.3k
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Answer: A: Tophat option -p
9.8 years ago by Manvendra Singh ★ 2.2k
0
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0
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28k
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Comment: Comment: How do I convert Affymetrix ID names to gene names
updated 2.6 years ago by 44k • written 9.8 years ago by ★ 2.2k
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1
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18k
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Comment: Comment: Differential gene Analysis by Limma
updated 2.6 years ago by 44k • written 9.8 years ago by ★ 2.2k
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0
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18k
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Comment: Comment: Differential gene Analysis by Limma
updated 2.6 years ago by 44k • written 9.8 years ago by ★ 2.2k
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0
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15k
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Comment: Comment: HTSeq-count high number of no_feature
updated 2.6 years ago by 44k • written 9.8 years ago by ★ 2.2k
0
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1
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15k
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Comment: C: HTSeq-count high number of no_feature
9.8 years ago by Manvendra Singh ★ 2.2k
0
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0
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2.2k
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Comment: Comment: biological replicates analysis
updated 2.6 years ago by 44k • written 9.8 years ago by ★ 2.2k
0
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1
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2.2k
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Comment: Comment: biological replicates analysis
updated 2.6 years ago by 44k • written 9.8 years ago by ★ 2.2k
0
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1
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1.6k
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Comment: Comment: differentially expressed gene
updated 2.6 years ago by 44k • written 9.8 years ago by ★ 2.2k
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0
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2.8k
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Answer: Answer: differential expression analysis of RNASeq data in different species
updated 2.6 years ago by 44k • written 9.8 years ago by ★ 2.2k
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1
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2.6k
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Comment: Comment: [solved] IGV browser: export feature coordinates to BED file does not work
updated 2.6 years ago by 44k • written 9.8 years ago by ★ 2.2k
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0
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3.1k
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Answer: Answer: Error in samtools uniquely mapped reads file
updated 3.2 years ago by 44k • written 9.8 years ago by ★ 2.2k
1
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1
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1.4k
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Answer: C: Generatin expression level file from Bam file
9.8 years ago by Manvendra Singh ★ 2.2k
0
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0
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13k
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Comment: C: why cannot I load my data with numeric variables in R?
9.8 years ago by Manvendra Singh ★ 2.2k
0
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1
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13k
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Comment: C: why cannot I load my data with numeric variables in R?
9.8 years ago by Manvendra Singh ★ 2.2k
0
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1
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13k
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Answer: Answer: Why am I unable to load my data from a tab separated file into R?
updated 2.6 years ago by 44k • written 9.8 years ago by ★ 2.2k
0
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0
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11k
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Comment: C: Normalising ChIP-seq data to RPM using a 1 or 2 count for paired-end data?
9.8 years ago by Manvendra Singh ★ 2.2k
0
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1
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11k
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Answer: Answer: Normalising ChIP-seq data to RPM using a 1 or 2 count for paired-end data?
updated 2.6 years ago by 44k • written 9.8 years ago by ★ 2.2k
0
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0
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2.4k
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Comment: Comment: Which method could be used for cross normailizing microarray samples from differ
updated 2.6 years ago by 44k • written 9.8 years ago by ★ 2.2k
0
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1
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4.6k
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Comment: C: Where can I download a list of mtDNA haplogroup mutations?
9.8 years ago by Manvendra Singh ★ 2.2k
374 results • Page 2 of 8
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