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Answer: Answer: What is the better transformation we should use to transform the expression leve
updated 2.7 years ago by 44k • written 10.0 years ago by ★ 2.2k
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Comment: Comment: same padj for all the genes after DEseq analysis
updated 2.7 years ago by 44k • written 10.0 years ago by ★ 2.2k
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Answer: Answer: Suggestion for correctly annotating predicted genes and discovering isoform of t
updated 2.7 years ago by 44k • written 10.0 years ago by ★ 2.2k
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Comment: C: Error RNA-seq data, TOPHAT
10.0 years ago by Manvendra Singh ★ 2.2k
3
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3.2k
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Answer: C: Error RNA-seq data, TOPHAT
10.0 years ago by Manvendra Singh ★ 2.2k
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3.0k
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Answer: A: gene co-expression on microarray assembled from GDS datasets is influenced by st
10.0 years ago by Manvendra Singh ★ 2.2k
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1
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2.8k
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Answer: Answer: ChIP-Seq Histone modification time span study
updated 2.8 years ago by 44k • written 10.0 years ago by ★ 2.2k
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1
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11k
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Comment: Comment: RNAseq heatmap.2 log2FC clustering
updated 2.8 years ago by 44k • written 10.0 years ago by ★ 2.2k
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Answer: A: How to get Fasta Sequences with their gene name for many genes?
10.0 years ago by Manvendra Singh ★ 2.2k
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6.8k
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Comment: Comment: Filter out specific reads from FASTQ files
updated 2.8 years ago by 44k • written 10.0 years ago by ★ 2.2k
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1
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6.8k
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Answer: Answer: Filter out specific reads from FASTQ files
updated 2.8 years ago by 44k • written 10.0 years ago by ★ 2.2k
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0
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Comment: Comment: Advice on RNASeq analysis without biological replicates for differential gene ex
updated 2.8 years ago by 44k • written 10.0 years ago by ★ 2.2k
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1
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6.0k
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Comment: Comment: normalize on chip-seq data
updated 2.8 years ago by 44k • written 10.0 years ago by ★ 2.2k
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2.2k
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Answer: Answer: Tools to Choose For RNA-Seq Normalization?
updated 2.8 years ago by 44k • written 10.0 years ago by ★ 2.2k
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Comment: C: Cuffmerge running error
10.0 years ago by Manvendra Singh ★ 2.2k
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1
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9.9k
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Answer: A: Secondary Structure Prediction software RNA/DNA
10.0 years ago by Manvendra Singh ★ 2.2k
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1.5k
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Comment: Comment: Too many suppressed reads
updated 2.8 years ago by 44k • written 10.0 years ago by ★ 2.2k
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2
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9.0k
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Comment: Comment: Cuffmerge running error
updated 2.8 years ago by 44k • written 10.0 years ago by ★ 2.2k
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0
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3.5k
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Answer: Answer: Microarray contrast matrix design
updated 2.8 years ago by 44k • written 10.0 years ago by ★ 2.2k
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0
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2.7k
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Answer: A: Can these fusion predictions by tophat be trusted
10.0 years ago by Manvendra Singh ★ 2.2k
2
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0
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21k
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Answer: Answer: Advice on RNASeq analysis without biological replicates for differential gene ex
updated 2.8 years ago by 44k • written 10.0 years ago by ★ 2.2k
5
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1
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3.1k
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Answer: Answer: Which journal do you frequently read/recommend for reviews/updates in computatio
updated 2.8 years ago by 44k • written 10.0 years ago by ★ 2.2k
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1
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12k
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Comment: Comment: gtf file for htseq count
updated 2.8 years ago by 44k • written 10.0 years ago by ★ 2.2k
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1
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3.7k
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Comment: Comment: bedGraph -----> saving as a table in the other format
updated 2.8 years ago by 44k • written 10.0 years ago by ★ 2.2k
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0
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1.9k
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Comment: C: Track Ensembl Changes by Species
10.0 years ago by Manvendra Singh ★ 2.2k
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1
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1.9k
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Comment: C: Track Ensembl Changes by Species
10.0 years ago by Manvendra Singh ★ 2.2k
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0
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20k
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Comment: C: Cufflinks error: BAM record error: found spliced alignment without XS attribute
10.0 years ago by Manvendra Singh ★ 2.2k
1
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0
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20k
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Comment: Comment: Cufflinks error: BAM record error: found spliced alignment without XS attribute
updated 2.8 years ago by 44k • written 10.0 years ago by ★ 2.2k
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0
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5.7k
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Comment: C: Counting number of bases covered across multiple bam files
10.0 years ago by Manvendra Singh ★ 2.2k
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0
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1.7k
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Answer: Answer: Correlation of expression changes
updated 2.8 years ago by 44k • written 10.0 years ago by ★ 2.2k
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0
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24k
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Comment: C: the latest human reference genome fasta file
10.0 years ago by Manvendra Singh ★ 2.2k
1
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1
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24k
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Comment: Comment: the latest human reference genome fasta file
updated 2.8 years ago by 44k • written 10.0 years ago by ★ 2.2k
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2
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24k
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Answer: Answer: the latest human reference genome fasta file
updated 2.8 years ago by 44k • written 10.0 years ago by ★ 2.2k
0
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1
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3.4k
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Comment: Comment: Finding miRNA & small RNA that are human-specific?
updated 2.8 years ago by 44k • written 10.0 years ago by ★ 2.2k
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1
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3.4k
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Comment: Comment: Finding miRNA & small RNA that are human-specific?
updated 3.0 years ago by 44k • written 10.0 years ago by ★ 2.2k
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1
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3.4k
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Comment: C: Finding miRNA & small RNA that are human-specific?
10.0 years ago by Manvendra Singh ★ 2.2k
2
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1
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2.8k
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Comment: Comment: Errors with sort-bed
updated 2.8 years ago by 44k • written 10.0 years ago by ★ 2.2k
1
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1
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2.8k
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Comment: Comment: Errors with sort-bed
updated 2.8 years ago by 44k • written 10.0 years ago by ★ 2.2k
1
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0
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1.5k
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Comment: Comment: Too many suppressed reads
updated 2.8 years ago by 44k • written 10.0 years ago by ★ 2.2k
2
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2
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1.5k
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Answer: Answer: Too many suppressed reads
updated 2.8 years ago by 44k • written 10.0 years ago by ★ 2.2k
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0
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3.5k
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Comment: C: ncRNA incluidng lincRNA analysis
10.0 years ago by Manvendra Singh ★ 2.2k
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0
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4.0k
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Comment: C: FASTQC can't detect short overrepresented sequences (e.g., less than 25 bp)?
10.0 years ago by Manvendra Singh ★ 2.2k
1
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1
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4.0k
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Comment: C: FASTQC can't detect short overrepresented sequences (e.g., less than 25 bp)?
10.0 years ago by Manvendra Singh ★ 2.2k
1
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2
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20k
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Answer: Answer: Cufflinks error: BAM record error: found spliced alignment without XS attribute
updated 2.8 years ago by 44k • written 10.0 years ago by ★ 2.2k
0
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1
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3.5k
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Comment: C: ncRNA incluidng lincRNA analysis
10.0 years ago by Manvendra Singh ★ 2.2k
3
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0
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3.5k
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Answer: Answer: ncRNA incluidng lincRNA analysis
updated 2.8 years ago by 44k • written 10.0 years ago by ★ 2.2k
1
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0
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2.0k
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Comment: Comment: What type of cell do I have
updated 2.8 years ago by 44k • written 10.0 years ago by ★ 2.2k
0
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1
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3.9k
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Answer: Answer: Heatmap of Agilent two colors Dye Swap experiment
updated 2.8 years ago by 44k • written 10.0 years ago by ★ 2.2k
1
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0
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5.1k
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Answer: Answer: PhastCons score and LOD
updated 2.8 years ago by 44k • written 10.0 years ago by ★ 2.2k
3
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0
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20k
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Answer: Answer: What is the simple way to remove known batch effect from RNA-seq data ?
updated 2.8 years ago by 44k • written 10.0 years ago by ★ 2.2k
374 results • Page 4 of 8
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