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1
vote
8
replies
2.4k
views
How do we find the number of sequences with terminal mismatches?
bowtie bam
updated 6.8 years ago by ★ 5.0k • written 6.8 years ago by ★ 2.1k
0
votes
2
replies
7.6k
views
Comment: C: What are the major differences between plink and plink2?
6.8 years ago by MAPK ★ 2.1k
0
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1
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7.6k
views
Comment: C: What are the major differences between plink and plink2?
6.8 years ago by MAPK ★ 2.1k
8
votes
5
replies
3.2k
views
How can I calculate the number of sequences starting with different nucleotides using perl
fasta perl
updated 6.8 years ago by 49k • written 6.8 years ago by ★ 2.1k
0
votes
2
replies
3.2k
views
Comment: C: How can I calculate the number of sequences starting with different nucleotides
6.8 years ago by MAPK ★ 2.1k
4
votes
3
replies
1.3k
views
How do I normalize this data for plotting?
normalization
updated 6.8 years ago by 8.7k • written 6.8 years ago by ★ 2.1k
0
votes
0
replies
4.7k
views
Comment: C: How do I extract aligned reads from BAM file?
6.8 years ago by MAPK ★ 2.1k
3
votes
2
replies
4.7k
views
How do I extract aligned reads from BAM file?
fastq bam
updated 6.8 years ago by 104k • written 6.8 years ago by ★ 2.1k
0
votes
0
replies
4.6k
views
Comment: C: How can I plot alignment between fastq reads and reference sequence?
6.8 years ago by MAPK ★ 2.1k
0
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1
reply
4.6k
views
Comment: C: How can I plot alignment between fastq reads and reference sequence?
6.8 years ago by MAPK ★ 2.1k
7
votes
5
replies
4.6k
views
How can I plot alignment between fastq reads and reference sequence?
alignment
updated 6.8 years ago by 27k • written 6.8 years ago by ★ 2.1k
3
votes
1
reply
947
views
How can we plot alignment distribution ?
alignment
updated 6.8 years ago by 88k • written 6.8 years ago by ★ 2.1k
0
votes
1
reply
2.2k
views
Comment: C: Family-based assciation study Vs. Population-based case-control study
6.8 years ago by MAPK ★ 2.1k
6
votes
5
replies
1.8k
views
How do I subset gene loci with no difference from DeSeq2 output?
deseq2
updated 6.8 years ago by 13k • written 6.8 years ago by ★ 2.1k
0
votes
1
reply
1.8k
views
Comment: C: How do I subset gene loci with no difference from DeSeq2 output?
6.8 years ago by MAPK ★ 2.1k
0
votes
2
replies
1.8k
views
Bowtie alignment of multiple fastq files
bowtie
updated 6.9 years ago by ▴ 990 • written 6.9 years ago by ★ 2.1k
8
votes
9
replies
5.4k
views
How to remove reads from fastq flle that match to a set of reads in my fasta file?
fastq fasta contamination
updated 6.9 years ago by 47k • written 6.9 years ago by ★ 2.1k
0
votes
0
replies
6.6k
views
Comment: C: Counting nucleotide frequency using perl script
7.0 years ago by MAPK ★ 2.1k
0
votes
1
reply
6.6k
views
Comment: C: Counting nucleotide frequency using perl script
7.0 years ago by MAPK ★ 2.1k
0
votes
1
reply
6.6k
views
Comment: C: Counting nucleotide frequency using perl script
7.0 years ago by MAPK ★ 2.1k
5
votes
9
replies
6.6k
views
Counting nucleotide frequency using perl script
perl nucleotide_frequency
updated 7.0 years ago by 35k • written 7.0 years ago by ★ 2.1k
0
votes
1
reply
6.6k
views
Comment: C: Counting nucleotide frequency using perl script
7.0 years ago by MAPK ★ 2.1k
1
vote
1
reply
2.1k
views
How to plot read coverage using genomic ranges
coverage plot r
7.0 years ago by MAPK ★ 2.1k
5
votes
3
replies
44k
views
Extract the values by matching two rows of one dataframe with the two columns of another dataframe
dataframe match
updated 2.5 years ago by 44k • written 9.7 years ago by ★ 2.1k
1
vote
0
replies
4.7k
views
Answer: A: Trinity assembly error
7.1 years ago by MAPK ★ 2.1k
3
votes
6
replies
4.7k
views
Trinity assembly error
rnaseq
7.1 years ago by MAPK ★ 2.1k
0
votes
1
reply
4.7k
views
Comment: C: Trinity assembly error
7.1 years ago by MAPK ★ 2.1k
0
votes
1
reply
4.7k
views
Comment: C: Trinity assembly error
7.1 years ago by MAPK ★ 2.1k
1
vote
1
reply
961
views
Possible evolutionary studies using whole genome and RNA-seq data
rnaseq
7.1 years ago by MAPK ★ 2.1k
0
votes
0
replies
2.7k
views
Comment: C: SRA data sets and runs
7.1 years ago by MAPK ★ 2.1k
0
votes
0
replies
2.7k
views
Comment: C: SRA data sets and runs
7.1 years ago by MAPK ★ 2.1k
4
votes
4
replies
2.7k
views
SRA data sets and runs
SRA rnaseq
7.1 years ago by MAPK ★ 2.1k
1
vote
0
replies
7.7k
views
Comment: C: Being co-first author for two nature series journals, what kinds of job can I fi
updated 7.1 years ago by 102k • written 7.1 years ago by ★ 2.1k
0
votes
1
reply
7.5k
views
Answer: A: What are the typical IBD PIHAT values calculated by PLINK for duplicate samples?
7.1 years ago by MAPK ★ 2.1k
1
vote
0
replies
12k
views
Answer: A: Principal Component Analysis: How many most variable genes should I take?
7.1 years ago by MAPK ★ 2.1k
2
votes
1
reply
2.0k
views
Are there any tools to simulate mutations?
vcf mutation
updated 7.1 years ago by ★ 2.9k • written 7.1 years ago by ★ 2.1k
0
votes
1
reply
3.9k
views
Comment: C: Finding mutations from bam files
7.1 years ago by MAPK ★ 2.1k
0
votes
1
reply
3.9k
views
Answer: A: Finding mutations from bam files
7.1 years ago by MAPK ★ 2.1k
2
votes
2
replies
7.7k
views
Answer: A: Being co-first author for two nature series journals, what kinds of job can I fi
7.1 years ago by MAPK ★ 2.1k
53
votes
10
replies
35k
views
9 follow
How is the design in DESeq2 work?
deseq2
updated 7.1 years ago by 104k • written 7.1 years ago by ★ 2.1k
0
votes
1
reply
35k
views
Comment: C: How is the design in DESeq2 work?
7.1 years ago by MAPK ★ 2.1k
0
votes
0
replies
3.7k
views
Comment: C: How do we plot KEGG pathway for multiple genes??
7.2 years ago by MAPK ★ 2.1k
0
votes
1
reply
3.7k
views
Comment: C: How do we plot KEGG pathway for multiple genes??
7.2 years ago by MAPK ★ 2.1k
8
votes
4
replies
3.7k
views
How do we plot KEGG pathway for multiple genes??
KEGG
updated 7.2 years ago by 35k • written 7.2 years ago by ★ 2.1k
0
votes
1
reply
2.6k
views
How to convert gene symbol to ncbi UID
UID entrez
updated 7.2 years ago by 27k • written 7.2 years ago by ★ 2.1k
0
votes
1
reply
3.0k
views
Comment: C: Extract dna sequences from given ids using R codes/package
7.2 years ago by MAPK ★ 2.1k
3
votes
3
replies
3.0k
views
Extract dna sequences from given ids using R codes/package
R fasta
updated 7.2 years ago by 27k • written 7.2 years ago by ★ 2.1k
0
votes
1
reply
1.1k
views
How do I extract list of sequences given their IDs ?
sequence
updated 7.2 years ago by 27k • written 7.2 years ago by ★ 2.1k
0
votes
1
reply
1.8k
views
Comment: C: Aligning multiple short reads with multiple long reference reads
7.2 years ago by MAPK ★ 2.1k
0
votes
2
replies
1.8k
views
Comment: C: Aligning multiple short reads with multiple long reference reads
7.2 years ago by MAPK ★ 2.1k
560 results • Page 6 of 12
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