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1
vote
6
replies
1.8k
views
Aligning multiple short reads with multiple long reference reads
alignment
7.0 years ago by MAPK ★ 2.1k
0
votes
0
replies
1.9k
views
Error generated by Rsamtools while importing the best base quality score from the bam file
R
updated 20 months ago by 44k • written 9.3 years ago by ★ 2.1k
20
votes
17
replies
18k
views
6 follow
Convert sequence file to fasta format using python
python
updated 7.0 years ago by 10k • written 7.0 years ago by ★ 2.1k
0
votes
1
reply
18k
views
Comment: C: Convert sequence file to fasta format using python
7.0 years ago by MAPK ★ 2.1k
0
votes
2
replies
18k
views
Comment: C: Convert sequence file to fasta format using python
7.0 years ago by MAPK ★ 2.1k
0
votes
1
reply
1.6k
views
Using DESeq2 for RNAseq analysis for two samples and a control with two replicates each
rnaseq
updated 7.0 years ago by 10k • written 7.0 years ago by ★ 2.1k
1
vote
3
replies
2.2k
views
Barcode and Adapter sequences in sRNAseq data
RNA-Seq
7.1 years ago by MAPK ★ 2.1k
0
votes
1
reply
2.2k
views
Comment: C: Barcode and Adapter sequences in sRNAseq data
7.1 years ago by MAPK ★ 2.1k
0
votes
0
replies
1.6k
views
Comment: C: How to find adapter in sRNAseq Data
7.1 years ago by MAPK ★ 2.1k
1
vote
2
replies
1.6k
views
How to find adapter in sRNAseq Data
rna-seq
7.1 years ago by MAPK ★ 2.1k
0
votes
0
replies
2.0k
views
Comment: C: Copy number variation and its impact on allele frequency
7.2 years ago by MAPK ★ 2.1k
0
votes
1
reply
2.0k
views
Comment: C: Copy number variation and its impact on allele frequency
7.2 years ago by MAPK ★ 2.1k
1
vote
4
replies
2.0k
views
Copy number variation and its impact on allele frequency
CNV maf alle
7.2 years ago by MAPK ★ 2.1k
0
votes
0
replies
4.1k
views
Comment: C: What are the available methods to detect cross-sample contamination of NGS data?
7.2 years ago by MAPK ★ 2.1k
2
votes
5
replies
4.1k
views
What are the available methods to detect cross-sample contamination of NGS data?
QC NGS
updated 7.2 years ago by 20k • written 7.2 years ago by ★ 2.1k
0
votes
1
reply
4.1k
views
Comment: C: What are the available methods to QC NGS data for sample contamination
7.2 years ago by MAPK ★ 2.1k
7
votes
5
replies
14k
views
PCA using plink files
pca
updated 7.3 years ago by 11k • written 7.3 years ago by ★ 2.1k
0
votes
1
reply
14k
views
Comment: C: PCA using plink files
7.3 years ago by MAPK ★ 2.1k
1
vote
3
replies
1.5k
views
How to get the SNP statistics for Hg19
SNPs
updated 7.4 years ago by 163k • written 8.4 years ago by ★ 2.1k
3
votes
5
replies
2.4k
views
How to find refgene location for SNPs?
SNPs refGene
updated 2.1 years ago by 44k • written 8.6 years ago by ★ 2.1k
0
votes
1
reply
1.5k
views
verifyBamID generating error 'VcfFileException'
verifybamID
updated 7.8 years ago by ▴ 280 • written 8.0 years ago by ★ 2.1k
5
votes
2
replies
3.3k
views
R package for clonal expansion
clonal expansion bioconductor
updated 7.9 years ago by ★ 4.3k • written 8.3 years ago by ★ 2.1k
2
votes
1
reply
3.5k
views
Comment: C: Bioinformatics specialist, UCSF
8.0 years ago by MAPK ★ 2.1k
0
votes
1
reply
2.9k
views
Comment: C: How to calculate IBD for different ethnicity using plink
8.0 years ago by MAPK ★ 2.1k
0
votes
0
replies
2.1k
views
What is the minimum number of SNPs required for Plink to calculate accurate Identity by descent (IBD value)?
IBD
8.0 years ago by MAPK ★ 2.1k
0
votes
3
replies
2.9k
views
How to calculate IBD for different ethnicity using plink
plink IBD
8.0 years ago by MAPK ★ 2.1k
2
votes
0
replies
9.7k
views
Comment: C: Better for my career: Degree in computer science or Phd in bioinformatics?
8.0 years ago by MAPK ★ 2.1k
1
vote
2
replies
5.1k
views
how do I create vcf4.1 instead of 4.2
VCF
updated 8.0 years ago by 13k • written 8.0 years ago by ★ 2.1k
0
votes
0
replies
1.8k
views
Comment: C: Farming Systems Research Agronomist - Digital Agriculture, CSIRO Agriculture & F
8.0 years ago by MAPK ★ 2.1k
0
votes
1
reply
1.8k
views
R script/package to plot mutation comparision in cancers
r
8.1 years ago by MAPK ★ 2.1k
6
votes
2
replies
4.9k
views
Tools to draw cell figures
cell
updated 8.1 years ago by 7.6k • written 8.1 years ago by ★ 2.1k
0
votes
1
reply
8.5k
views
Comment: C: How to change the SM tags of BAM files
8.1 years ago by MAPK ★ 2.1k
3
votes
3
replies
8.5k
views
How to change the SM tags of BAM files
BAM
8.1 years ago by MAPK ★ 2.1k
0
votes
0
replies
2.4k
views
Comment: Comment: How to get coverage ratio?
updated 2.6 years ago by 44k • written 8.1 years ago by ★ 2.1k
1
vote
0
replies
3.9k
views
Comment: C: How to extract reads from BAM file and shuffle in another BAM to simulate a new
8.1 years ago by MAPK ★ 2.1k
0
votes
1
reply
3.9k
views
Comment: C: How to extract reads from BAM file and shuffle in another BAM to simulate a new
8.1 years ago by MAPK ★ 2.1k
8
votes
7
replies
3.9k
views
How to extract reads from BAM file and shuffle in another BAM to simulate a new contaminated BAM file
NGS BAM
updated 8.1 years ago by ★ 2.9k • written 8.1 years ago by ★ 2.1k
0
votes
0
replies
1.9k
views
ContEst NGS sample contamination
NGS
8.1 years ago by MAPK ★ 2.1k
0
votes
0
replies
5.0k
views
Comment: C: VariantAnnotation installation error in R package
8.2 years ago by MAPK ★ 2.1k
2
votes
2
replies
5.0k
views
VariantAnnotation installation error in R package
r
updated 8.2 years ago by ★ 1.8k • written 8.2 years ago by ★ 2.1k
0
votes
0
replies
58k
views
Comment: C: How to extract specific chromosome from vcf file
8.2 years ago by MAPK ★ 2.1k
0
votes
0
replies
58k
views
Comment: C: How to extract specific chromosome from vcf file
8.2 years ago by MAPK ★ 2.1k
5
votes
5
replies
2.1k
views
Looking for a Bioinformatics position with an MPhil/ MS in the US as a non-US passport holder
career
updated 17 months ago by 44k • written 8.3 years ago by ★ 2.1k
0
votes
0
replies
2.0k
views
Syntax for ContEst program to identify sample contamination
ContEst
updated 8.2 years ago by 20 • written 8.3 years ago by ★ 2.1k
0
votes
1
reply
2.6k
views
Comment: C: Wondering about prospects in Bioinformatics/Computational Biology
8.2 years ago by MAPK ★ 2.1k
0
votes
2
replies
2.9k
views
How do I run ConTest for sample contamination test?
contEst NGS
updated 8.2 years ago by 20 • written 8.4 years ago by ★ 2.1k
0
votes
0
replies
3.3k
views
Comment: C: How to BLAST 400 genes against genome at once?
8.2 years ago by MAPK ★ 2.1k
0
votes
0
replies
2.8k
views
Comment: C: How many samples are there in 1000 genome project VCF file?
8.2 years ago by MAPK ★ 2.1k
0
votes
0
replies
2.8k
views
Comment: C: How many samples are there in 1000 genome project VCF file?
8.2 years ago by MAPK ★ 2.1k
5
votes
6
replies
2.8k
views
How many samples are there in 1000 genome project VCF file?
vcf 1000genome
updated 8.2 years ago by ★ 1.4k • written 8.2 years ago by ★ 2.1k
560 results • Page 7 of 12
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