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13
votes
4
replies
18k
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Command to extract SNPs from VCF file using bcftool
SNPs bcftools VCF
updated 20 months ago by 44k • written 8.6 years ago by ★ 2.1k
6
votes
2
replies
11k
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Answer: A: How can we extract these genes from VCF file?
8.6 years ago by MAPK ★ 2.1k
13
votes
10
replies
11k
views
Extract specific genes from VCF file?
extract VCF VCF snp
8.6 years ago by MAPK ★ 2.1k
0
votes
0
replies
11k
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Comment: C: Extract specific genes from VCF file?
8.6 years ago by MAPK ★ 2.1k
0
votes
1
reply
2.0k
views
Extract Negative chromosome(gene) location from VCF files
VCF extract vcf chromosome location gene location
updated 8.6 years ago by 104k • written 8.6 years ago by ★ 2.1k
0
votes
1
reply
4.5k
views
Extracting subset of VCF file for list of genes
VCF
8.6 years ago by MAPK ★ 2.1k
0
votes
0
replies
1.2k
views
Biospace target sequencing to multi-genome vcf file
target sequencing
8.6 years ago by MAPK ★ 2.1k
0
votes
0
replies
2.1k
views
Comment: C: Targeted capture sequencing data
8.6 years ago by MAPK ★ 2.1k
1
vote
4
replies
2.1k
views
Targeted capture sequencing data
targeted sequencing
8.6 years ago by MAPK ★ 2.1k
0
votes
0
replies
1.6k
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Comment: C: How to get the SNP statistics for Hg19
8.6 years ago by MAPK ★ 2.1k
0
votes
1
reply
2.1k
views
Comment: C: Targeted capture sequencing data
8.6 years ago by MAPK ★ 2.1k
2
votes
2
replies
1.4k
views
Comment: C: Is there any database or project about heathly people ?
8.6 years ago by MAPK ★ 2.1k
0
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0
replies
2.2k
views
Comment: C: Any tool to get SNP wise stat from VCF
8.6 years ago by MAPK ★ 2.1k
0
votes
1
reply
1.4k
views
Where can I find targeted sequencing data
targeted sequencing
8.6 years ago by MAPK ★ 2.1k
0
votes
0
replies
1.6k
views
Batch effect in whole genome data
complete genomics
8.6 years ago by MAPK ★ 2.1k
0
votes
0
replies
3.4k
views
Comment: C: How to estimate the power of association test for small sample size
8.6 years ago by MAPK ★ 2.1k
3
votes
3
replies
3.4k
views
How to estimate the power of association test for small sample size
association test
updated 8.6 years ago by 5.3k • written 8.6 years ago by ★ 2.1k
0
votes
1
reply
2.4k
views
Comment: C: Non-coding variants in TCGA data
8.6 years ago by MAPK ★ 2.1k
2
votes
4
replies
2.2k
views
Family-based assciation study Vs. Population-based case-control study
GWAS
updated 8.7 years ago by • 0 • written 8.9 years ago by ★ 2.1k
7
votes
4
replies
2.4k
views
Non-coding variants in TCGA data
cancer SNPs
updated 8.7 years ago by 22k • written 8.7 years ago by ★ 2.1k
5
votes
1
reply
43k
views
Answer: A: Extract subset of samples from multigenome vcf file
8.7 years ago by MAPK ★ 2.1k
1
vote
1
reply
43k
views
Comment: C: Extract subset of samples from multigenome vcf file
8.7 years ago by MAPK ★ 2.1k
29
votes
10
replies
43k
views
6 follow
Extract subset of samples from multigenome vcf file
vcf
8.7 years ago by MAPK ★ 2.1k
0
votes
1
reply
43k
views
Comment: C: Extract subset of samples from multigenome vcf file
8.7 years ago by MAPK ★ 2.1k
3
votes
5
replies
1.8k
views
Why are there too many mutations in controls, but not in tumour?
cancer somatics mutation
updated 8.7 years ago by ▴ 940 • written 8.7 years ago by ★ 2.1k
3
votes
1
reply
2.5k
views
How to separate germline variants from somatic and vice-versa in cancer
somatic germline cancer
updated 8.7 years ago by 7.3k • written 8.7 years ago by ★ 2.1k
0
votes
1
reply
2.0k
views
Comment: C: Complex disease vs. Cancer
8.7 years ago by MAPK ★ 2.1k
4
votes
3
replies
2.0k
views
Complex disease vs. Cancer
complex disease variants
updated 8.7 years ago by ★ 1.2k • written 8.7 years ago by ★ 2.1k
0
votes
5
replies
1.5k
views
QC methods for next generation sequencing samples
NGS samples
updated 8.7 years ago by 47k • written 8.7 years ago by ★ 2.1k
0
votes
1
reply
1.7k
views
What are the factors that determines the IBD of pairs of individuals?
IBD
8.7 years ago by MAPK ★ 2.1k
0
votes
0
replies
1.5k
views
Comment: C: QC methods for next generation sequencing samples
8.7 years ago by MAPK ★ 2.1k
0
votes
2
replies
1.5k
views
Comment: C: QC methods for next generation sequencing samples
8.7 years ago by MAPK ★ 2.1k
0
votes
0
replies
2.3k
views
Comment: C: Negative IBD values
8.7 years ago by MAPK ★ 2.1k
3
votes
1
reply
1.9k
views
Using cbioportal gene ontology for new gene/variants discovery
gene discovery cancer
8.7 years ago by MAPK ★ 2.1k
0
votes
2
replies
1.9k
views
How to validate genes identified computationally
functional validation
8.7 years ago by MAPK ★ 2.1k
0
votes
0
replies
7.6k
views
Answer: A: From gene symbol list to their coordinates
8.7 years ago by MAPK ★ 2.1k
0
votes
0
replies
1.9k
views
Comment: C: Confusing HGVS notation
8.7 years ago by MAPK ★ 2.1k
4
votes
2
replies
1.9k
views
Confusing HGVS notation
HGVS
8.7 years ago by MAPK ★ 2.1k
4
votes
1
reply
1.4k
views
Publication for cancer causing somatic variants
publication
8.7 years ago by MAPK ★ 2.1k
0
votes
0
replies
2.0k
views
Comment: C: COSMIC data and rare variant
8.7 years ago by MAPK ★ 2.1k
3
votes
2
replies
2.0k
views
COSMIC data and rare variant
rare variant
updated 8.7 years ago by ▴ 1000 • written 8.7 years ago by ★ 2.1k
5
votes
5
replies
3.8k
views
How to find exact allele frequency for the SNP/indel variants ?
maf dbsnp
8.7 years ago by MAPK ★ 2.1k
0
votes
0
replies
3.8k
views
Comment: C: How to find exact allele frequency for the SNP/indel variants ?
8.7 years ago by MAPK ★ 2.1k
0
votes
1
reply
3.8k
views
Comment: C: How to find exact allele frequency for the SNP/indel variants ?
8.7 years ago by MAPK ★ 2.1k
0
votes
0
replies
2.8k
views
How to identify each data point in PCA for ethnicity study?
PCA GWAS
8.7 years ago by MAPK ★ 2.1k
0
votes
0
replies
1.7k
views
Comment: C: Simulate genotypes for Identity by descent test
8.8 years ago by MAPK ★ 2.1k
0
votes
1
reply
1.7k
views
Comment: C: Simulate genotypes for Identity by descent test
8.8 years ago by MAPK ★ 2.1k
3
votes
3
replies
1.7k
views
Simulate genotypes for Identity by descent test
IBD
updated 8.8 years ago by 28k • written 8.8 years ago by ★ 2.1k
3
votes
1
reply
4.6k
views
How do you calculate IBD
IBD
updated 8.8 years ago by ▴ 920 • written 8.8 years ago by ★ 2.1k
19
votes
4
replies
2.8k
views
How to do coverage counting for each genomic position in R ?
R
updated 23 months ago by 44k • written 9.5 years ago by ★ 2.1k
560 results • Page 9 of 12
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