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Filter our reads in sam file less than specific length
sam reads
updated 2.5 years ago by 164k • written 2.5 years ago by ▴ 80
0
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0
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1.2k
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Comment: Comment: JGI Seal ArrayIndexOutOfBoundsException
3.0 years ago by daewowo ▴ 80
0
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0
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1.2k
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Comment: Comment: JGI Seal ArrayIndexOutOfBoundsException
3.0 years ago by daewowo ▴ 80
1
vote
3
replies
1.2k
views
JGI Seal ArrayIndexOutOfBoundsException
alignment filtering Seal genome
3.0 years ago by daewowo ▴ 80
0
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0
replies
596
views
NCBI STAT Taxonomy and Krona percentages different
NCBI STAT Krona Taxonomy
3.0 years ago by daewowo ▴ 80
2
votes
1
reply
675
views
Bowtie2 CIGAR value of '*' makes mapping quality in SAM file difficult to interpret
sam bowtie2
updated 3.1 years ago by 86k • written 3.1 years ago by ▴ 80
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0
replies
562
views
Magic blast -score parameter
magicblast
3.1 years ago by daewowo ▴ 80
1
vote
2
replies
755
views
Bowtie2 scoring translated to number of non matching nt allowed
bowtie2
3.1 years ago by daewowo ▴ 80
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0
replies
755
views
Comment: Comment: Bowtie2 scoring translated to number of non matching nt allowed
3.1 years ago by daewowo ▴ 80
2
votes
1
reply
803
views
BBSplit ambiguous dataset analysis
bbmap bbsplit
updated 3.1 years ago by 148k • written 3.1 years ago by ▴ 80
2
votes
3
replies
1.6k
views
Extract human, mouse and pig aligned reads from .bam file alignment to conactenated genomes
Extract ConcatRef bam
3.1 years ago by daewowo ▴ 80
1
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0
replies
1.6k
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Answer: Answer: Extract human, mouse and pig aligned reads from .bam file alignment to conactena
3.1 years ago by daewowo ▴ 80
0
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0
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1.6k
views
Comment: Comment: Extract human, mouse and pig aligned reads from .bam file alignment to conactena
3.1 years ago by daewowo ▴ 80
11
votes
9
replies
3.5k
views
Bam file depth of coverage and statstics
Bam
3.2 years ago by daewowo ▴ 80
1
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0
replies
3.5k
views
Answer: Answer: Bam file depth of coverage and statstics
3.2 years ago by daewowo ▴ 80
0
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0
replies
3.5k
views
Comment: Comment: Bam file depth of coverage and statstics
3.2 years ago by daewowo ▴ 80
0
votes
2
replies
7.9k
views
Comment: Comment: Generate GTF file
3.2 years ago by daewowo ▴ 80
0
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1
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3.5k
views
Comment: Comment: Bam file depth of coverage and statstics
3.2 years ago by daewowo ▴ 80
3
votes
4
replies
7.9k
views
Generate GTF file
GTF
updated 3.2 years ago by 7.0k • written 3.2 years ago by ▴ 80
0
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0
replies
162k
views
Comment: Comment: The Biostar Handbook. A bioinformatics e-book for beginners.
3.2 years ago by daewowo ▴ 80
2
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1
reply
3.5k
views
Comment: Comment: Bam file depth of coverage and statstics
3.2 years ago by daewowo ▴ 80
0
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0
replies
3.5k
views
Comment: Comment: Bam file depth of coverage and statstics
3.2 years ago by daewowo ▴ 80
4
votes
6
replies
3.8k
views
How to download NCBI fastq data to local machine where access type is "Use Cloud Data Delivery"
delivery NCBI cloud
updated 3.5 years ago by 148k • written 3.5 years ago by ▴ 80
0
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0
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3.8k
views
Comment: Comment: How to download NCBI fastq data to local machine where access type is "Use Cloud
3.5 years ago by daewowo ▴ 80
0
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1
reply
3.8k
views
Comment: Comment: How to download NCBI fastq data to local machine where access type is "Use Cloud
3.5 years ago by daewowo ▴ 80
0
votes
1
reply
3.8k
views
Comment: Comment: How to download NCBI fastq data to local machine where access type is "Use Cloud
3.5 years ago by daewowo ▴ 80
0
votes
0
replies
2.8k
views
Comment: Comment: Bowtie2 problem when use aligned or unaligned output file for re-alignment
3.5 years ago by daewowo ▴ 80
3
votes
1
reply
1.2k
views
Calculate coverage
coverage
3.5 years ago by daewowo ▴ 80
0
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2
replies
2.8k
views
Comment: Comment: Bowtie2 problem when use aligned or unaligned output file for re-alignment
3.5 years ago by daewowo ▴ 80
0
votes
1
reply
2.8k
views
Comment: Comment: Bowtie2 problem when use aligned or unaligned output file for re-alignment
3.6 years ago by daewowo ▴ 80
0
votes
1
reply
2.8k
views
Comment: Comment: Bowtie2 problem when use aligned or unaligned output file for re-alignment
3.6 years ago by daewowo ▴ 80
0
votes
1
reply
2.8k
views
Comment: Comment: Bowtie2 problem when use aligned or unaligned output file for re-alignment
3.6 years ago by daewowo ▴ 80
2
votes
2
replies
1.2k
views
Get read id's from .sam file
sam
updated 3.6 years ago by 164k • written 3.6 years ago by ▴ 80
0
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0
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2.8k
views
Comment: Comment: Bowtie2 problem when use aligned or unaligned output file for re-alignment
3.6 years ago by daewowo ▴ 80
5
votes
13
replies
2.8k
views
Bowtie2 problem when use aligned or unaligned output file for re-alignment
bowtie2
3.5 years ago by daewowo ▴ 80
0
votes
0
replies
928
views
Comment: Comment: Read alignment anomaly
3.6 years ago by daewowo ▴ 80
1
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1
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928
views
Comment: Comment: Read alignment anomaly
3.6 years ago by daewowo ▴ 80
1
vote
3
replies
928
views
Read alignment anomaly
igv reads rna-seq
3.6 years ago by daewowo ▴ 80
0
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1
reply
1.5k
views
Comment: Comment: Convert sam file with no header to fastq
updated 3.6 years ago by 148k • written 3.6 years ago by ▴ 80
0
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1
reply
1.5k
views
Comment: Comment: Convert sam file with no header to fastq
3.6 years ago by daewowo ▴ 80
3
votes
6
replies
1.5k
views
Convert sam file with no header to fastq
fastq sam gatk
updated 3.6 years ago by 86k • written 3.6 years ago by ▴ 80
2
votes
4
replies
1.1k
views
MagicBLAST only using one thread
MagicBLAST
updated 3.6 years ago by ▴ 160 • written 3.6 years ago by ▴ 80
1
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0
replies
1.1k
views
Answer: Answer: MagicBLAST only using one thread
3.6 years ago by daewowo ▴ 80
0
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1
reply
1.1k
views
Comment: Comment: MagicBLAST only using one thread
3.6 years ago by daewowo ▴ 80
0
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0
replies
1.1k
views
Comment: Comment: bowtie2 unaligned option not writing to file
3.6 years ago by daewowo ▴ 80
0
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2
replies
1.1k
views
Comment: Comment: bowtie2 unaligned option not writing to file
3.6 years ago by daewowo ▴ 80
3
votes
4
replies
1.1k
views
bowtie2 unaligned option not writing to file
bowtie2
updated 3.6 years ago by 11k • written 3.6 years ago by ▴ 80
0
votes
0
replies
491
views
BioPython Resriction package output formatting
Biopython
3.7 years ago by daewowo ▴ 80
0
votes
0
replies
5.8k
views
Comment: Comment: pysam error when reading .bam file ValueError: file has no sequences defined (mo
3.7 years ago by daewowo ▴ 80
0
votes
1
reply
825
views
Post Alignment basic QC of RNA-Seq data
alignment RNA-Seq
updated 3.8 years ago by 14k • written 3.8 years ago by ▴ 80
56 results • Page 1 of 2
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