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Comment: C: Appending sequences to downloaded NCBI nt database
4.0 years ago by Biogeek ▴ 470
0
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0
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1.9k
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Comment: C: Appending sequences to downloaded NCBI nt database
4.0 years ago by Biogeek ▴ 470
0
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4
replies
1.9k
views
Appending sequences to downloaded NCBI nt database
ncbi blastdb_alias makeblastdb
4.0 years ago by Biogeek ▴ 470
1
vote
1
reply
854
views
Answer: A: Renaming Entry In Fasta File
4.4 years ago by Biogeek ▴ 470
0
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1
reply
781
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Comment: C: Retrieve multiple refseq genomes in seperate fasta files
4.4 years ago by Biogeek ▴ 470
1
vote
3
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781
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Retrieve multiple refseq genomes in seperate fasta files
ncbi Refseq
updated 20 months ago by 44k • written 4.4 years ago by ▴ 470
0
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0
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1.7k
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Bioinformatics workstation Spec advice: Metagenomics
workstation RAM metagenomics
4.6 years ago by Biogeek ▴ 470
0
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0
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20k
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Comment: C: MDS plots with R
updated 4.9 years ago by 44k • written 10.5 years ago by ▴ 470
0
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1
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11k
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Comment: A: FPKM values / Data analysis
updated 4.9 years ago by 44k • written 10.5 years ago by ▴ 470
0
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0
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2.6k
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Comment: C: Stand alone Blast annotation with multiple databases
updated 4.9 years ago by 44k • written 8.9 years ago by ▴ 470
0
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1
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3.5k
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Answer: A: Differential expression analysis on Trinity tool
updated 4.9 years ago by 44k • written 8.9 years ago by ▴ 470
2
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1
reply
2.3k
views
Answer: A: Low quality bases at the starts of HiSeq 2 x 100bp reads
updated 4.9 years ago by 44k • written 8.9 years ago by ▴ 470
0
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0
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11k
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Comment: C: Paired End Trimmomatic producing asymmetric paired read files.
updated 4.9 years ago by 44k • written 8.9 years ago by ▴ 470
0
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0
replies
11k
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Comment: C: Paired End Trimmomatic producing asymmetric paired read files.
updated 4.9 years ago by 44k • written 8.9 years ago by ▴ 470
0
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2
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11k
views
Comment: C: Paired End Trimmomatic producing asymmetric paired read files.
updated 4.9 years ago by 44k • written 8.9 years ago by ▴ 470
0
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1
reply
20k
views
Comment: C: MDS plots with R
updated 5.1 years ago by 44k • written 10.5 years ago by ▴ 470
0
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1
reply
2.5k
views
Comment: C: General question about batch effect, read trimming and what to do when the adapt
5.6 years ago by Biogeek ▴ 470
0
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1
reply
1.2k
views
Comment: C: gene IDs enrichment in plants
5.6 years ago by Biogeek ▴ 470
1
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0
replies
2.5k
views
Answer: A: General question about batch effect, read trimming and what to do when the adapt
5.6 years ago by Biogeek ▴ 470
2
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0
replies
1.0k
views
Answer: A: Making a Group Tree using RNA-seq Read Count in R
5.6 years ago by Biogeek ▴ 470
0
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0
replies
1.3k
views
Confused with Fishers test for GO enrichment
fishers Enrichment input
5.6 years ago by Biogeek ▴ 470
2
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4
replies
2.2k
views
Example of gene2cat goseq
goseq
updated 5.6 years ago by ★ 1.1k • written 5.6 years ago by ▴ 470
0
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0
replies
2.2k
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Comment: C: Split comma seperated list of GO terms into multiple rows and maintain gene iden
5.6 years ago by Biogeek ▴ 470
0
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1
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2.2k
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Comment: C: Split comma seperated list of GO terms into multiple rows and maintain gene iden
5.6 years ago by Biogeek ▴ 470
0
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0
replies
2.2k
views
Comment: C: Split comma seperated list of GO terms into multiple rows and maintain gene iden
5.6 years ago by Biogeek ▴ 470
7
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11
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2.2k
views
Split comma seperated list of GO terms into multiple rows and maintain gene identifier in each
Gene ontology data manipulation
updated 5.6 years ago by ★ 2.7k • written 5.6 years ago by ▴ 470
4
votes
2
replies
5.9k
views
ReviGO down, any alternatives for GO enrichment condensing?
revigo GO enrichment topgo simrel
updated 5.6 years ago by ▴ 20 • written 5.6 years ago by ▴ 470
0
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0
replies
892
views
Enrichment via simple Fishers exact: Combine or not?
go enrichment fishers statistics
5.6 years ago by Biogeek ▴ 470
0
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0
replies
1.2k
views
Comment: C: slurm Exceeded step memory limit: Interleaving FastQ files
5.7 years ago by Biogeek ▴ 470
1
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2
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1.2k
views
slurm Exceeded step memory limit: Interleaving FastQ files
fastq slurm
5.7 years ago by Biogeek ▴ 470
0
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1
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2.1k
views
Comment: C: Sequencing (+1bp in length?) and adaptor trimming.
5.7 years ago by Biogeek ▴ 470
1
vote
4
replies
2.1k
views
Sequencing (+1bp in length?) and adaptor trimming.
RNA-Seq sequencing adapters
updated 5.7 years ago by 147k • written 5.7 years ago by ▴ 470
0
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2
replies
1.8k
views
weird e-values with rapsearch
rapsearch e-values
updated 5.8 years ago by 85k • written 8.1 years ago by ▴ 470
4
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7
replies
4.2k
views
7 follow
Get -400bp to +50bp sequence of gene from gff3 file
upstream downstream promoter motifs
updated 2.4 years ago by • 0 • written 5.8 years ago by ▴ 470
1
vote
1
reply
2.1k
views
Gene correlation analysis after deseq2
deseq2 correlation clustering
updated 5.9 years ago by • 0 • written 5.9 years ago by ▴ 470
2
votes
2
replies
2.1k
views
Multiple fasta file : calculate % composition of amino acids
amino acids composition calculate
updated 5.9 years ago by 164k • written 5.9 years ago by ▴ 470
0
votes
1
reply
1.4k
views
Comment: C: Refseq accessions - getting gene function and GO terms for each one
6.0 years ago by Biogeek ▴ 470
0
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3
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1.4k
views
Refseq accessions - getting gene function and GO terms for each one
refseq gene function gene ontology
6.0 years ago by Biogeek ▴ 470
0
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1
reply
1.3k
views
Refseq vs original genome assembly and issues
refseq genome alignment annotation
6.0 years ago by Biogeek ▴ 470
1
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0
replies
6.0k
views
Comment: C: STAR two -pass mode - lower alignment rate than one pass mode?
6.0 years ago by Biogeek ▴ 470
3
votes
3
replies
6.0k
views
STAR two -pass mode - lower alignment rate than one pass mode?
star alignment two pass mode
updated 3.0 years ago by ▴ 60 • written 6.0 years ago by ▴ 470
0
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1
reply
3.0k
views
Comment: A: extract information from Uniprot
6.0 years ago by Biogeek ▴ 470
0
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0
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1.7k
views
Answer: A: Best tools to search for and report all alignments
6.0 years ago by Biogeek ▴ 470
0
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0
replies
947
views
Comment: C: small FASTa file from genome guided trinity assembly?
6.0 years ago by Biogeek ▴ 470
0
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1
reply
1.5k
views
Comment: C: NCBI genome version vs published genome version - what's 'better'?
6.0 years ago by Biogeek ▴ 470
1
vote
1
reply
1.5k
views
Comment: C: NCBI genome version vs published genome version - what's 'better'?
6.0 years ago by Biogeek ▴ 470
4
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8
replies
1.5k
views
NCBI genome version vs published genome version - what's 'better'?
genome resources ncbi genome published genome
6.0 years ago by Biogeek ▴ 470
0
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1
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1.3k
views
Comment: C: mRNA / Protein Annotation questions - etiquette and consensus
6.0 years ago by Biogeek ▴ 470
4
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4
replies
1.3k
views
mRNA / Protein Annotation questions - etiquette and consensus
Genome Out-dated Re-annotation blastx blastp
updated 6.0 years ago by 15k • written 6.0 years ago by ▴ 470
0
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0
replies
1.8k
views
Comment: C: Genome-aligned RNA-Seq: one treatment showing high% of unmapped reads:too short
6.1 years ago by Biogeek ▴ 470
187 results • Page 1 of 4
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