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11
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RNA-Seq of environmental samples
environmental samples RNA-Seq contamination
8.8 years ago by Biogeek ▴ 470
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2
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2.4k
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Comment: C: RNA-Seq of environmental samples
8.8 years ago by Biogeek ▴ 470
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1
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6.4k
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Answer: A: Bowtie memory warning
8.8 years ago by Biogeek ▴ 470
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1
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2.4k
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Comment: C: RNA-Seq of environmental samples
8.8 years ago by Biogeek ▴ 470
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2
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1.8k
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Simple question: obtaining GO terminology utilizing NCBI GI's
ncbi annotation GO
8.9 years ago by Biogeek ▴ 470
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0
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1.8k
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Answer: A: Simple question: obtaining GO terminology utilizing NCBI GI's
8.9 years ago by Biogeek ▴ 470
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0
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4.2k
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Comment: C: EdgeR filter thresholds
8.9 years ago by Biogeek ▴ 470
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2
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4.2k
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EdgeR filter thresholds
edger DIFFERENTIAL EXPRESSION
updated 8.9 years ago by 12k • written 8.9 years ago by ▴ 470
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1
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4.5k
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Comment: C: Visualize groups of conditions bys MDS.
8.9 years ago by Biogeek ▴ 470
2
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1
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4.5k
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Answer: A: Visualize groups of conditions bys MDS.
8.9 years ago by Biogeek ▴ 470
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0
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1.6k
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High BCV in differential expression, thoughts?
differential expression
8.9 years ago by Biogeek ▴ 470
5
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4
replies
4.4k
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Filtering by FPKM, opinions and thoughts
fpkm filtering
updated 8.9 years ago by 8.9k • written 8.9 years ago by ▴ 470
0
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1
reply
2.4k
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curating a viridiplantae database
blast sequences annotation
updated 8.9 years ago by ▴ 30 • written 8.9 years ago by ▴ 470
1
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1
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2.3k
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Annotation: From GO to IPS
Interproscan gene ontology
updated 8.9 years ago by ★ 2.3k • written 8.9 years ago by ▴ 470
0
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1
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1.6k
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How to get blastx top hit (e-score)
blastx besthit
updated 9.0 years ago by 7.3k • written 9.0 years ago by ▴ 470
0
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0
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1.3k
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RAPSEARCH extracting best hit, how to do it?
rapsearch similarity
9.0 years ago by Biogeek ▴ 470
0
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1
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2.0k
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Comment: C: edgeR: is calcnormfactors necessary for complex GLM approach?
9.0 years ago by Biogeek ▴ 470
2
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3
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2.0k
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edgeR: is calcnormfactors necessary for complex GLM approach?
edgeR normalization
updated 9.0 years ago by 105k • written 9.0 years ago by ▴ 470
0
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1
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2.1k
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Annotating the transcripts of a de novo plant transcriptome
plant-transcriptome blastx standalone annotation
updated 2.6 years ago by 44k • written 9.1 years ago by ▴ 470
1
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0
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2.6k
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Answer: Answer: denovo analysis of rna seq data
updated 2.6 years ago by 44k • written 9.0 years ago by ▴ 470
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1
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3.2k
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Comment: C: Going from BlastX to GO annotation
9.0 years ago by Biogeek ▴ 470
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1
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3.3k
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Comment: C: Low number of differentially expressed genes
9.0 years ago by Biogeek ▴ 470
0
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3
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3.3k
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Low number of differentially expressed genes
RNA-Seq differential-expression edgeR
updated 2.6 years ago by 44k • written 9.0 years ago by ▴ 470
1
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3
replies
2.7k
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Stand alone Blast annotation with multiple databases
annotation blast
updated 2.5 years ago by 44k • written 9.1 years ago by ▴ 470
0
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0
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3.6k
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Comment: C: Differential expression analysis on Trinity tool
9.1 years ago by Biogeek ▴ 470
1
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7
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11k
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Paired End Trimmomatic producing asymmetric paired read files.
RNA-Seq qc trimmomatic
updated 2.5 years ago by 44k • written 9.1 years ago by ▴ 470
5
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11
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21k
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MDS plots with R
RNA-Seq MDS-plots Statistics
updated 3.3 years ago by 44k • written 10.7 years ago by ▴ 470
0
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0
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21k
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Comment: A: MDS plots with R
10.7 years ago by Biogeek ▴ 470
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1
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21k
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Comment: A: MDS plots with R
10.7 years ago by Biogeek ▴ 470
1
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6
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7.0k
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normalized FPKM matrix file EdgeR and GO Mapping
FPKM RNA-Seq differential-exp GOmapping
updated 3.4 years ago by 44k • written 10.8 years ago by ▴ 470
0
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1
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7.0k
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Comment: C: normalized FPKM matrix file EdgeR and GO Mapping
10.8 years ago by Biogeek ▴ 470
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0
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7.0k
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Comment: A: normalized FPKM matrix file EdgeR and GO Mapping
10.8 years ago by Biogeek ▴ 470
4
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4
replies
12k
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FPKM values / Data analysis
Analysis RNA-Seq FPKM transcriptomics
updated 3.4 years ago by 44k • written 10.8 years ago by ▴ 470
0
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0
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2.0k
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Weird Outputs With Dynamictrim And Lengthsort On Custom Settings
qc
10.9 years ago by Biogeek ▴ 470
4
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3
replies
2.8k
views
Is There Such A Way/ Program To Do This...
fasta blast rna-seq
updated 11.0 years ago by ★ 4.8k • written 11.0 years ago by ▴ 470
3
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2
replies
6.0k
views
Trinity/Rsem/Edger Pipeline...Now What?
trinity blast analysis
updated 11.0 years ago by 8.3k • written 11.0 years ago by ▴ 470
0
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1
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2.2k
views
Error With Trinity + Alignreader.Pl
trinity unix
updated 23 months ago by 44k • written 11.2 years ago by ▴ 470
187 results • Page 4 of 4
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