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377
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Answer: Answer: Correct VCF header
3 months ago by tomas4482 ▴ 430
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1
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386
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Don't understand three modes of TCGA STAR 2-pass
GDC RNA-seq TCGA
updated 4 months ago by ★ 1.2k • written 4 months ago by ▴ 430
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2
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432
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ascp Session stop time out
ena aspera
updated 4 months ago by 147k • written 4 months ago by ▴ 430
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1
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432
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Comment: Comment: ascp Session stop time out
4 months ago by tomas4482 ▴ 430
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1
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559
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Comment: Comment: Seurat not creating nCount_RNA and nFeature_RNA
4 months ago by tomas4482 ▴ 430
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0
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481
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Comment: Comment: Subset VCF to exon region but still get intron_variant annotation
5 months ago by tomas4482 ▴ 430
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0
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481
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Comment: Comment: Subset VCF to exon region but still get intron_variant annotation
5 months ago by tomas4482 ▴ 430
1
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4
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481
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Subset VCF to exon region but still get intron_variant annotation
Ensembl vcf VEP vcftools
updated 5 months ago by ★ 1.3k • written 5 months ago by ▴ 430
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977
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Comment: Comment: Ensembl IDs <-> Gene Symbols mapping -- Using org.Hs.eg.db, biomaRt or EnsDb.Hsa
5 months ago by tomas4482 ▴ 430
1
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1
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977
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Answer: Answer: Ensembl IDs <-> Gene Symbols mapping -- Using org.Hs.eg.db, biomaRt or EnsDb.Hsa
5 months ago by tomas4482 ▴ 430
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0
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2.5k
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Comment: Comment: What does an amino acid sequence that does not start with methionine mean?
6 months ago by tomas4482 ▴ 430
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0
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2.2k
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Comment: Comment: Problems when trying to use ensembl-vep
6 months ago by tomas4482 ▴ 430
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0
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204
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Producing sequence for splicing isoforms
isoform rMATs splicing alternative SplAdder
6 months ago by tomas4482 ▴ 430
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0
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939
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Comment: Comment: could not find function "gseGO" in ClusterProfiler
17 months ago by tomas4482 ▴ 430
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1
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961
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Answer: Answer: Somatic variant calling mutect2 ctDNA liquid biopsy
18 months ago by tomas4482 ▴ 430
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0
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580
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Answer: Answer: How can I make a similar mutated gene expression figure with TCGA data
19 months ago by tomas4482 ▴ 430
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0
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1.4k
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Comment: Comment: Seurat Metadata to Dataframe Manipulation
21 months ago by tomas4482 ▴ 430
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1
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1.4k
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Answer: Answer: Seurat Metadata to Dataframe Manipulation
21 months ago by tomas4482 ▴ 430
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0
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1.9k
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Comment: Comment: Is it possible to split BAM without sorting it?
2.1 years ago by tomas4482 ▴ 430
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0
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649
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Answer: Answer: Batch effect removal for RNA-seq data (single-end and pair-end)
2.1 years ago by tomas4482 ▴ 430
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1
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1.9k
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Comment: Comment: Is it possible to split BAM without sorting it?
2.1 years ago by tomas4482 ▴ 430
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0
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1.9k
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Comment: Comment: Is it possible to split BAM without sorting it?
2.1 years ago by tomas4482 ▴ 430
6
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10
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1.9k
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Is it possible to split BAM without sorting it?
samtools BAM bamtools
2.1 years ago by tomas4482 ▴ 430
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1
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1.9k
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Comment: Comment: Is it possible to split BAM without sorting it?
2.1 years ago by tomas4482 ▴ 430
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1
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1.9k
views
Comment: Comment: Is it possible to split BAM without sorting it?
2.1 years ago by tomas4482 ▴ 430
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0
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557
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Answer: Answer: RNA-seq data from human patients with both GBM and Alzheimer's
2.2 years ago by tomas4482 ▴ 430
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0
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1.5k
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Comment: Comment: Variant identified, What next?
2.3 years ago by tomas4482 ▴ 430
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0
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1.1k
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Comment: Comment: BLAST unmapped reads from BAM
2.3 years ago by tomas4482 ▴ 430
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1
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1.5k
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Answer: Answer: Variant identified, What next?
2.3 years ago by tomas4482 ▴ 430
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0
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1.4k
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Comment: Comment: Merging different fastq files into one folder
2.3 years ago by tomas4482 ▴ 430
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0
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1.4k
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Answer: Answer: Merging different fastq files into one folder
2.3 years ago by tomas4482 ▴ 430
1
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1
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3.5k
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Comment: Comment: How to convert a FASTQ file to FASTA file without the number of reads
2.3 years ago by tomas4482 ▴ 430
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1
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3.5k
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Comment: Comment: How to convert a FASTQ file to FASTA file without the number of reads
2.3 years ago by tomas4482 ▴ 430
1
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1
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3.5k
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Answer: Answer: How to convert a FASTQ file to FASTA file without the number of reads
2.3 years ago by tomas4482 ▴ 430
0
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0
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1.2k
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Comment: Comment: Count expression of 10x scRNA-seq after UMI extraction
2.3 years ago by tomas4482 ▴ 430
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5
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1.2k
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Count expression of 10x scRNA-seq after UMI extraction
featureCount subread scRNA umitools
2.3 years ago by tomas4482 ▴ 430
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1
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1.2k
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Comment: Comment: Count expression of 10x scRNA-seq after UMI extraction
2.3 years ago by tomas4482 ▴ 430
4
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1
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3.3k
views
Answer: Answer: Installing ensembl-vep
2.3 years ago by tomas4482 ▴ 430
1
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0
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575
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Answer: Answer: How to match tumor fastq file to normal fastq file? (I just have a set of tumor
2.3 years ago by tomas4482 ▴ 430
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0
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3.0k
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Comment: Comment: SRA not splitting when trying to download fastq
2.3 years ago by tomas4482 ▴ 430
1
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1
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3.0k
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Comment: Comment: SRA not splitting when trying to download fastq
2.3 years ago by tomas4482 ▴ 430
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0
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1.3k
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Comment: Comment: merging data; remove extra rows
2.3 years ago by tomas4482 ▴ 430
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1
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1.3k
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Answer: Answer: merging data; remove extra rows
2.3 years ago by tomas4482 ▴ 430
0
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0
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631
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Answer: Answer: Retrieval of specific classes from an Ontology
2.3 years ago by tomas4482 ▴ 430
0
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0
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3.0k
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Comment: Comment: SRA not splitting when trying to download fastq
2.3 years ago by tomas4482 ▴ 430
1
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1
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3.0k
views
Comment: Comment: SRA not splitting when trying to download fastq
2.3 years ago by tomas4482 ▴ 430
0
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2
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3.0k
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Answer: Answer: SRA not splitting when trying to download fastq
2.3 years ago by tomas4482 ▴ 430
0
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0
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1.1k
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Comment: Comment: correlation among RNAseq and proteomics analysis
2.3 years ago by tomas4482 ▴ 430
2
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1
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1.1k
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Answer: Answer: correlation among RNAseq and proteomics analysis
2.3 years ago by tomas4482 ▴ 430
1
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1
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4.8k
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Comment: Comment: Distinguish between forward strand, plus strand, sense strand
2.3 years ago by tomas4482 ▴ 430
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