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Comment: Comment: Some cells in meta.data not present in provided counts matrix.
2.3 years ago by tomas4482 ▴ 430
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1
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4.8k
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Comment: Comment: Distinguish between forward strand, plus strand, sense strand
2.3 years ago by tomas4482 ▴ 430
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1
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4.8k
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Answer: Answer: Distinguish between forward strand, plus strand, sense strand
2.3 years ago by tomas4482 ▴ 430
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1
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1.6k
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Comment: Comment: using txt file to pass pathways for pipelines
2.4 years ago by tomas4482 ▴ 430
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1.6k
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Comment: Comment: using txt file to pass pathways for pipelines
2.4 years ago by tomas4482 ▴ 430
0
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0
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1.6k
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Comment: Comment: using txt file to pass pathways for pipelines
2.4 years ago by tomas4482 ▴ 430
0
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1
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8.5k
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Comment: Comment: 10x 3' library creates R1 and R2 fastq files with the same read length
2.4 years ago by tomas4482 ▴ 430
0
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1
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8.5k
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Comment: Comment: 10x 3' library creates R1 and R2 fastq files with the same read length
2.4 years ago by tomas4482 ▴ 430
0
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1
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8.5k
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Comment: Comment: 10x 3' library creates R1 and R2 fastq files with the same read length
2.4 years ago by tomas4482 ▴ 430
16
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18
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8.5k
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6 follow
10x 3' library creates R1 and R2 fastq files with the same read length
10x fastq scRNA-seq
updated 15 months ago by • 0 • written 2.4 years ago by ▴ 430
2
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0
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1.3k
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Answer: Answer: The nightmare of coordinate systems
2.4 years ago by tomas4482 ▴ 430
1
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0
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988
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Comment: Comment: Make a specific format gene ontology file?
2.4 years ago by tomas4482 ▴ 430
1
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1
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988
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Answer: Answer: Make a specific format gene ontology file?
2.4 years ago by tomas4482 ▴ 430
1
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1
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3.0k
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Answer: Answer: Downloading a huge amount of Fastq files
2.4 years ago by tomas4482 ▴ 430
2
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0
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574
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Answer: Answer: Why does the CADD database have multiple lines for the same mutation/substitutio
2.4 years ago by tomas4482 ▴ 430
0
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1
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818
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Answer: Answer: Get nucleotide sequence of assembled RNA transcripts
2.4 years ago by tomas4482 ▴ 430
1
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0
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485
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gene strand determined by flag in read1 and read2 should be intepreted differently?
samtools RNA-seq bam
updated 17 months ago by 44k • written 2.4 years ago by ▴ 430
1
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0
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2.3k
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Comment: Comment: how can we count that how many alignments contains a deletion?please guide me
2.4 years ago by tomas4482 ▴ 430
1
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1
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2.3k
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Answer: Answer: how can we count that how many alignments contains a deletion?please guide me
2.4 years ago by tomas4482 ▴ 430
3
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0
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464
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Answer: Answer: Colon cancer and single nucleotide variants
2.4 years ago by tomas4482 ▴ 430
0
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0
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4.9k
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Answer: Answer: STAR alignment getting KILLED in process. Please help!
2.4 years ago by tomas4482 ▴ 430
1
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1
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1.5k
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Answer: Answer: Why after normalization of scRNA-Seq data by DESeq2 the p-value of a large numbe
2.5 years ago by tomas4482 ▴ 430
0
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0
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47k
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Comment: Comment: Get chromosome sizes from fasta file
2.5 years ago by tomas4482 ▴ 430
1
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0
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1.1k
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Answer: Answer: Seurat dotplot
2.6 years ago by tomas4482 ▴ 430
1
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1
reply
787
views
Does anyone know how to use Human Splicing Finder?
prediction splicing finder HSF human
2.6 years ago by tomas4482 ▴ 430
1
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0
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787
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Answer: Answer: Does anyone know how to use Human Splicing Finder?
2.6 years ago by tomas4482 ▴ 430
0
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0
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877
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Answer: Answer: Help with adding new ID names to read count
2.7 years ago by tomas4482 ▴ 430
0
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0
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583
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Comment: Comment: How to concatenate samtools output into one single file?
2.7 years ago by tomas4482 ▴ 430
2
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2
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583
views
How to concatenate samtools output into one single file?
samtools
updated 17 months ago by 44k • written 2.7 years ago by ▴ 430
1
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0
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467
views
Single exon has two distinct PSI in TCGA SpliceSeq.
SpliceSeq alternative splicing skipping exon
2.7 years ago by tomas4482 ▴ 430
0
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0
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3.3k
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Answer: Answer: BAM file reads mapping to multiple genes
3.0 years ago by tomas4482 ▴ 430
0
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0
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883
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Comment: Comment: integrated scRNA-seq dataset
3.0 years ago by tomas4482 ▴ 430
1
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2
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883
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integrated scRNA-seq dataset
scRNA-seq
updated 3.0 years ago by 9.0k • written 3.0 years ago by ▴ 430
0
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1
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866
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Comment: Comment: GC/AT base content crossed at the tail of read
3.1 years ago by tomas4482 ▴ 430
0
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3
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866
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GC/AT base content crossed at the tail of read
DNA sequence WGS WES
updated 3.1 years ago by 147k • written 3.1 years ago by ▴ 430
1
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7
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3.0k
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featureCounts has low successfully assigned reads
RNA-seq featureCounts
updated 16 months ago by • 0 • written 3.1 years ago by ▴ 430
1
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1
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3.0k
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Answer: Answer: featureCounts has low successfully assigned reads
3.1 years ago by tomas4482 ▴ 430
0
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0
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3.8k
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Answer: Answer: Base recalibration in normal vs. tumor somatic variant calling in WXS data?
3.1 years ago by tomas4482 ▴ 430
0
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1
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3.0k
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Comment: Comment: featureCounts has low successfully assigned reads
3.1 years ago by tomas4482 ▴ 430
0
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0
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3.0k
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Comment: Comment: featureCounts has low successfully assigned reads
3.1 years ago by tomas4482 ▴ 430
1
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7
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4.2k
views
6 follow
Aspera: Failed to authenticate
ENA aspera
3.1 years ago by tomas4482 ▴ 430
1
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0
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4.2k
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Answer: Answer: Aspera: Failed to authenticate
3.1 years ago by tomas4482 ▴ 430
0
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0
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4.2k
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Comment: Comment: Aspera: Failed to authenticate
3.1 years ago by tomas4482 ▴ 430
0
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1
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791
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Search predicted peptides from proteomes
peptide proteome search
updated 3.2 years ago by ▴ 40 • written 3.2 years ago by ▴ 430
4
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4
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1.8k
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SRA/ENA library layout is inconsistent with the data source
ENA fastq illumina SRA
3.3 years ago by tomas4482 ▴ 430
2
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0
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1.8k
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Answer: Answer: SRA/ENA library layout is inconsistent with the data source
3.3 years ago by tomas4482 ▴ 430
1
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0
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1.8k
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Comment: Comment: SRA/ENA library layout is inconsistent with the data source
3.3 years ago by tomas4482 ▴ 430
1
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0
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1.8k
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Comment: Comment: SRA/ENA library layout is inconsistent with the data source
3.3 years ago by tomas4482 ▴ 430
1
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1
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976
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Answer: Answer: Single-cell RNA Seq on whole organ or whole tissue with known cell origins
3.3 years ago by tomas4482 ▴ 430
0
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0
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6.9k
views
Comment: Comment: How to create interval list from reference fasta or dict file?
3.3 years ago by tomas4482 ▴ 430
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