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0
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2.6k
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Answer: A: continuos covariates in Plink
8.4 years ago by Floris Brenk ★ 1.0k
0
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0
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7.3k
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Answer: A: How to convert Illumina top/bot SNPs to forward/reverse?
8.4 years ago by Floris Brenk ★ 1.0k
0
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0
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1.7k
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Comment: C: Ped file contains: 0, -, multibase SNPs, and reverse order genotypes
8.4 years ago by Floris Brenk ★ 1.0k
0
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1
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3.1k
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Answer: A: How I can convert genotype data in a variety of pedigree formats R
8.4 years ago by Floris Brenk ★ 1.0k
1
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1
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3.1k
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Comment: C: How I can convert genotype data in a variety of pedigree formats R
8.4 years ago by Floris Brenk ★ 1.0k
0
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1
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2.8k
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Comment: C: Dealing with abnormally high coverage regions
8.5 years ago by Floris Brenk ★ 1.0k
1
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2
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3.7k
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Filtering imputed vcf files based on probability scores
imputation vcf genotype
updated 8.5 years ago by 20 • written 8.6 years ago by ★ 1.0k
0
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1
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1.8k
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Comment: C: Detect chromosome abnormalities in WGS
8.5 years ago by Floris Brenk ★ 1.0k
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1
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1.8k
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Comment: C: Detect chromosome abnormalities in WGS
8.5 years ago by Floris Brenk ★ 1.0k
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1
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1.8k
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Comment: C: Detect chromosome abnormalities in WGS
8.5 years ago by Floris Brenk ★ 1.0k
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0
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5.9k
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Answer: A: PLINK: Compute LD from list of SNPs using 1000 Genomes
8.5 years ago by Floris Brenk ★ 1.0k
0
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1
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2.8k
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Comment: C: Identification of haplotype blocks
8.5 years ago by Floris Brenk ★ 1.0k
1
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1
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11k
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Comment: C: How do people know to use at least 30X coverage in WGS?
8.5 years ago by Floris Brenk ★ 1.0k
0
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0
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1.3k
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Epistasis programs: recommendations and experience
epistasis GWAS
8.5 years ago by Floris Brenk ★ 1.0k
0
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0
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19k
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Comment: C: Filtering Imputation output: how to filter on a VCF INFO field
8.5 years ago by Floris Brenk ★ 1.0k
1
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1
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2.1k
views
Haplotypes; phasing, positve seletion and estimating age
haplotypes resequencing
updated 8.5 years ago by 28k • written 8.5 years ago by ★ 1.0k
0
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0
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2.9k
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Comment: C: Using PLINK to check SNP variation for a gene
8.6 years ago by Floris Brenk ★ 1.0k
0
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0
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2.4k
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Comment: C: SNP running using imputed genotype
8.6 years ago by Floris Brenk ★ 1.0k
0
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0
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1.1k
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Is there more genetic variation at the edges of haplotypes?
haplotype genome
8.6 years ago by Floris Brenk ★ 1.0k
0
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1
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2.4k
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Comment: C: SNP running using imputed genotype
8.6 years ago by Floris Brenk ★ 1.0k
10
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11
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11k
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Reformat minimac imputated files to plink file
imputation minimac mach plink
updated 3.2 years ago by 45k • written 10.9 years ago by ★ 1.0k
1
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0
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2.3k
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Comment: C: genotype imputation - alleles
8.6 years ago by Floris Brenk ★ 1.0k
0
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0
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8.9k
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Comment: C: convert imputed genotypes in VCF file to plink format
8.6 years ago by Floris Brenk ★ 1.0k
1
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0
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2.4k
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Comment: C: Convert SNP from A_B format into plink using R package
8.7 years ago by Floris Brenk ★ 1.0k
1
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0
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2.6k
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Comment: C: Creating intergenic bam file
8.7 years ago by Floris Brenk ★ 1.0k
3
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0
replies
1.8k
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Answer: A: Population stratification in targeted sequencing?
8.7 years ago by Floris Brenk ★ 1.0k
1
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0
replies
5.7k
views
Comment: C: Allele count for SNPs
8.7 years ago by Floris Brenk ★ 1.0k
1
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0
replies
6.6k
views
Answer: A: What is the most popular and best tools/pipeline for small RNA seq analysis?
8.7 years ago by Floris Brenk ★ 1.0k
0
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0
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3.1k
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Comment: C: GTEx genotype data
8.7 years ago by Floris Brenk ★ 1.0k
2
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0
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2.2k
views
Answer: A: Alzheimer's Disease and Reconstruction of Networks
8.7 years ago by Floris Brenk ★ 1.0k
0
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0
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8.3k
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Answer: A: Correlation between biological replicates
8.7 years ago by Floris Brenk ★ 1.0k
0
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1
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4.9k
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Comment: C: R: read.plink Error
8.8 years ago by Floris Brenk ★ 1.0k
0
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1
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4.8k
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Comment: C: Is it 100% correct to transform SNP data (categorical) to (0, 1, 2) format to ap
8.8 years ago by Floris Brenk ★ 1.0k
1
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0
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6.3k
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Comment: C: Plink MDS plot based on IBS to exclude samples
8.8 years ago by Floris Brenk ★ 1.0k
0
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1
reply
6.3k
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Comment: C: Plink MDS plot based on IBS to exclude samples
8.8 years ago by Floris Brenk ★ 1.0k
2
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1
reply
6.3k
views
Answer: C: Plink MDS plot based on IBS to exclude samples
8.8 years ago by Floris Brenk ★ 1.0k
3
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7
replies
2.4k
views
RNA-seq de novo transcript assembly from one gene
RNA-Seq Assembly next-gen
8.9 years ago by Floris Brenk ★ 1.0k
0
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0
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2.4k
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Comment: C: RNA-seq de novo transcript assembly from one gene
8.9 years ago by Floris Brenk ★ 1.0k
0
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1
reply
2.4k
views
Comment: C: RNA-seq de novo transcript assembly from one gene
8.9 years ago by Floris Brenk ★ 1.0k
0
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1
reply
2.4k
views
Comment: C: RNA-seq de novo transcript assembly from one gene
8.9 years ago by Floris Brenk ★ 1.0k
1
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0
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2.0k
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Answer: A: Assigning haplotypes to individuals
8.9 years ago by Floris Brenk ★ 1.0k
1
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1
reply
2.0k
views
Assigning haplotypes to individuals
plink haplotype
8.9 years ago by Floris Brenk ★ 1.0k
0
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0
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1.9k
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Comment: C: Coverage/Read Depth per SNP in 1000Genomes
9.0 years ago by Floris Brenk ★ 1.0k
1
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2
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1.9k
views
Coverage/Read Depth per SNP in 1000Genomes
1000genomes SNP coverage
updated 9.0 years ago by 33k • written 9.0 years ago by ★ 1.0k
0
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1
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2.7k
views
Answer: A: haplotype association with quantitative traits
9.0 years ago by Floris Brenk ★ 1.0k
0
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1
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3.2k
views
Comment: C: why is this example homozygous 0/0 ?
9.0 years ago by Floris Brenk ★ 1.0k
0
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0
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6.5k
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Comment: C: Convert Plink's ped file into compound genotype format and 0/1/2 format
9.0 years ago by Floris Brenk ★ 1.0k
0
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1
reply
6.5k
views
Comment: C: Convert Plink's ped file into compound genotype format and 0/1/2 format
9.0 years ago by Floris Brenk ★ 1.0k
1
vote
1
reply
6.5k
views
Comment: C: Convert Plink's ped file into compound genotype format and 0/1/2 format
9.0 years ago by Floris Brenk ★ 1.0k
0
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0
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11k
views
Comment: C: Reformat minimac imputated files to plink file
9.0 years ago by Floris Brenk ★ 1.0k
178 results • Page 2 of 4
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