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13
votes
16
replies
7.4k
views
Mask or trim primer sequences in Amplicon sequencing
amplicon mask trimming fastq
8.5 years ago by Paul ★ 1.5k
0
votes
1
reply
2.1k
views
Comment: C: Variant Calling problem - find alternate heterozygous
8.6 years ago by Paul ★ 1.5k
5
votes
3
replies
2.1k
views
Variant Calling problem - find alternate heterozygous
vcf variant calling heterozygous
updated 8.6 years ago by ▴ 870 • written 8.6 years ago by ★ 1.5k
1
vote
0
replies
2.8k
views
Answer: A: How to select predefine transcript when annotate VCF
8.6 years ago by Paul ★ 1.5k
3
votes
1
reply
2.8k
views
How to select predefine transcript when annotate VCF
vep snpeff vcf annotation
8.6 years ago by Paul ★ 1.5k
14
votes
11
replies
5.0k
views
Variant Calling in Somatic mode
vcf variants varscan SNP sequencing
updated 8.6 years ago by 7.1k • written 8.6 years ago by ★ 1.5k
0
votes
0
replies
3.0k
views
Comment: C: Illumina does not equal reads PF with real number of reads
8.8 years ago by Paul ★ 1.5k
1
vote
2
replies
3.0k
views
Illumina does not equal reads PF with real number of reads
illumina fastq basespace
8.8 years ago by Paul ★ 1.5k
0
votes
2
replies
2.2k
views
Comment: C: Get gVCF file from genome coordinates
8.8 years ago by Paul ★ 1.5k
1
vote
8
replies
2.2k
views
Get gVCF file from genome coordinates
gVCF coorinates hg19
updated 8.8 years ago by 48k • written 8.8 years ago by ★ 1.5k
0
votes
0
replies
2.2k
views
Comment: C: Get gVCF file from genome coordinates
8.8 years ago by Paul ★ 1.5k
0
votes
1
reply
2.2k
views
Comment: C: Get gVCF file from genome coordinates
8.8 years ago by Paul ★ 1.5k
3
votes
3
replies
2.9k
views
Compare my FASTA with Taxonomics group
taxonomics blast FASTA NCBI fasta
updated 2.9 years ago by 45k • written 9.5 years ago by ★ 1.5k
0
votes
0
replies
2.9k
views
Comment: C: Compare my FASTA with Taxonomics group
9.5 years ago by Paul ★ 1.5k
1
vote
4
replies
2.9k
views
How to show whole blast contig
blast Embedding
updated 9.9 years ago by 35k • written 9.9 years ago by ★ 1.5k
0
votes
0
replies
2.9k
views
Comment: C: How to show whole blast contig
9.9 years ago by Paul ★ 1.5k
9
votes
0
replies
308k
views
Answer: Answer: How To Filter Mapped Reads With Samtools
updated 2.6 years ago by 45k • written 9.9 years ago by ★ 1.5k
0
votes
0
replies
143k
views
Comment: C: Fastq Convert To Fasta
9.9 years ago by Paul ★ 1.5k
5
votes
2
replies
3.3k
views
How to compare assembly from Trinity and Velvet/Oases
denovo-assembly RNA-Seq Trinity Velvet-Oases
updated 3.0 years ago by 45k • written 10.2 years ago by ★ 1.5k
0
votes
0
replies
3.0k
views
Comment: C: Variant Analysis on MiSeq Data
10.2 years ago by Paul ★ 1.5k
0
votes
1
reply
4.2k
views
Comment: C: How to get scaffold information from Trinity?
10.2 years ago by Paul ★ 1.5k
0
votes
1
reply
6.2k
views
Comment: C: Embedding Blast Tool In A Website
10.2 years ago by Paul ★ 1.5k
0
votes
1
reply
4.2k
views
Comment: C: How to get scaffold information from Trinity?
10.2 years ago by Paul ★ 1.5k
3
votes
5
replies
4.2k
views
How to get scaffold information from Trinity?
trinity scaffold de-novo transcript
updated 10.2 years ago by 16k • written 10.2 years ago by ★ 1.5k
0
votes
0
replies
3.3k
views
Comment: C: merge PE reads for Transcript De-Novo Assembly ??
10.2 years ago by Paul ★ 1.5k
0
votes
1
reply
3.3k
views
Comment: C: merge PE reads for Transcript De-Novo Assembly ??
10.2 years ago by Paul ★ 1.5k
0
votes
1
reply
3.4k
views
Comment: Comment: Normalization reads between samples for aneuploidy detection
updated 3.2 years ago by 45k • written 10.4 years ago by ★ 1.5k
1
vote
3
replies
3.4k
views
Normalization reads between samples for aneuploidy detection
reads gc content normalization aneuploidy
updated 3.2 years ago by 45k • written 10.4 years ago by ★ 1.5k
3
votes
1
reply
28k
views
Comment: Comment: tophat-cufflinks command pipeline
updated 3.5 years ago by 45k • written 10.5 years ago by ★ 1.5k
0
votes
0
replies
15k
views
Comment: C: Calculating GC content from BAM file by BED file
10.5 years ago by Paul ★ 1.5k
0
votes
1
reply
15k
views
Comment: C: Calculating GC content from BAM file by BED file
10.5 years ago by Paul ★ 1.5k
15
votes
25
replies
15k
views
9 follow
Calculating GC content from BAM file by BED file
cg content bam bed bedtools
updated 3.1 years ago by ▴ 10 • written 10.5 years ago by ★ 1.5k
0
votes
1
reply
15k
views
Comment: C: Calculating GC content from BAM file by BED file
10.5 years ago by Paul ★ 1.5k
0
votes
1
reply
15k
views
Comment: Comment: Calculating GC content from BAM file by BED file
updated 3.3 years ago by 45k • written 10.5 years ago by ★ 1.5k
0
votes
2
replies
15k
views
Comment: C: Calculating GC content from BAM file by BED file
10.5 years ago by Paul ★ 1.5k
0
votes
1
reply
15k
views
Comment: C: Calculating GC content from BAM file by BED file
10.5 years ago by Paul ★ 1.5k
0
votes
0
replies
15k
views
Comment: Comment: Calculating GC content from BAM file by BED file
updated 3.3 years ago by 45k • written 10.5 years ago by ★ 1.5k
0
votes
0
replies
12k
views
Comment: C: Compute Binned Gc-Normalized Read Counts From Bam File
10.5 years ago by Paul ★ 1.5k
11
votes
6
replies
7.2k
views
Filter out specific reads from FASTQ files
De-Novo FASTQ filtering Illumina RNA-Seq
updated 3.3 years ago by 45k • written 10.6 years ago by ★ 1.5k
0
votes
1
reply
7.2k
views
Comment: C: Filter out specific reads from FASTQ files
10.6 years ago by Paul ★ 1.5k
0
votes
0
replies
7.2k
views
Comment: C: Filter out specific reads from FASTQ files
10.6 years ago by Paul ★ 1.5k
1
vote
0
replies
5.2k
views
Answer: Answer: "Copy Number Variation" detection in Tumor only sample
updated 3.3 years ago by 45k • written 10.6 years ago by ★ 1.5k
0
votes
1
reply
3.6k
views
Comment: Comment: How To Force Output Strandbias In Gatk Unifiedgenotyper ?
updated 3.5 years ago by 45k • written 10.8 years ago by ★ 1.5k
3
votes
3
replies
5.3k
views
Different coverage from bedtools and in vcf file - HELP PLEASE
bedtools coverage vcf depth
updated 3.6 years ago by 45k • written 11.0 years ago by ★ 1.5k
0
votes
1
reply
5.3k
views
Comment: Comment: Different coverage from bedtools and in vcf file - HELP PLEASE
updated 3.6 years ago by 45k • written 11.0 years ago by ★ 1.5k
1
vote
1
reply
2.9k
views
How to calculate all transcripts from cufflinks
RNA-Seq FPKM cufflinks
updated 3.7 years ago by 45k • written 11.1 years ago by ★ 1.5k
1
vote
0
replies
2.9k
views
Answer: Answer: How to calculate all transcripts from cufflinks
updated 3.7 years ago by 45k • written 11.0 years ago by ★ 1.5k
0
votes
0
replies
5.0k
views
Comment: Comment: Getting An Error When Running Tophat-Fusion-Post
updated 3.6 years ago by 45k • written 11.0 years ago by ★ 1.5k
1
vote
1
reply
4.4k
views
Answer: A: How to extract unique mapped results from BWA results?
11.0 years ago by Paul ★ 1.5k
0
votes
0
replies
7.3k
views
Answer: A: Cummerbund
11.1 years ago by Paul ★ 1.5k
165 results • Page 3 of 4
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