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Answer: Answer: Getting an Expression Matrix from GDC Manifest File
6 days ago by Zhenyu Zhang ★ 1.2k
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1
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343
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Answer: Answer: Calculating TMB for TCGA data
6 days ago by Zhenyu Zhang ★ 1.2k
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1
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429
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Answer: Answer: Is It Possible to Calculate Microsatellite Instability (MSI) Directly from MAF F
6 days ago by Zhenyu Zhang ★ 1.2k
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2
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368
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How to install deconstructSigs in R
R
updated 16 days ago by 85k • written 17 days ago by ★ 1.2k
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427
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Comment: Comment: NCI Genomic Data Commons gdc-rnaseq-tool
17 days ago by Zhenyu Zhang ★ 1.2k
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1
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642
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Comment: Comment: merge my own RNA-seq data with TCGA UCSCXena data sets. and proper normalisatio
17 days ago by Zhenyu Zhang ★ 1.2k
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111
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Strelka2 germline variants very different when pairing with different tumors?
germline
18 days ago by Zhenyu Zhang ★ 1.2k
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406
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Answer: Answer: TCGA Methylation Beta and Gene Expression Help
18 days ago by Zhenyu Zhang ★ 1.2k
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383
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Answer: Answer: Converting ICGC ids to TCGA format
18 days ago by Zhenyu Zhang ★ 1.2k
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1
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642
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Answer: Answer: merge my own RNA-seq data with TCGA UCSCXena data sets. and proper normalisatio
18 days ago by Zhenyu Zhang ★ 1.2k
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0
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321
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Answer: Answer: How to get full list of TCGA patients with mutation data
18 days ago by Zhenyu Zhang ★ 1.2k
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1
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427
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Comment: Comment: NCI Genomic Data Commons gdc-rnaseq-tool
18 days ago by Zhenyu Zhang ★ 1.2k
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609
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Comment: Comment: TCGAbiolinks - fewer samples than expected
18 days ago by Zhenyu Zhang ★ 1.2k
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463
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Comment: Comment: How can studies compare microarray datas with rna-seq?
11 weeks ago by Zhenyu Zhang ★ 1.2k
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1
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432
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Answer: Answer: ESTIMATE -tidyestimate package- tumour purity
11 weeks ago by Zhenyu Zhang ★ 1.2k
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478
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Answer: Answer: Methods for calculation of TMB via GENIE/cBioPortal data
12 weeks ago by Zhenyu Zhang ★ 1.2k
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1
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429
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Answer: Answer: Obtaining clinical data from the TCGA data portal
3 months ago by Zhenyu Zhang ★ 1.2k
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1
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397
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Comment: Comment: Not all available files shown in TCGA website.
3 months ago by Zhenyu Zhang ★ 1.2k
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322
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Answer: Answer: Many MAF files in tcga case
4 months ago by Zhenyu Zhang ★ 1.2k
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387
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Answer: Answer: Don't understand three modes of TCGA STAR 2-pass
4 months ago by Zhenyu Zhang ★ 1.2k
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1
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609
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Comment: Comment: TCGAbiolinks - fewer samples than expected
4 months ago by Zhenyu Zhang ★ 1.2k
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356
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Answer: Answer: How to get copy number gain/loss from TCGA gene_level_copy_number
4 months ago by Zhenyu Zhang ★ 1.2k
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0
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435
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Comment: Comment: single cell RNA sequencing and mitochondrial percent
5 months ago by Zhenyu Zhang ★ 1.2k
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466
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Comment: Comment: Strange peaks in normalized FPKM data
5 months ago by Zhenyu Zhang ★ 1.2k
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333
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Answer: Answer: Converting GRCh38 30× 1000G data to GRCh37
5 months ago by Zhenyu Zhang ★ 1.2k
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0
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518
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Comment: Comment: Bulk converting superseded TCGA UUIDs
5 months ago by Zhenyu Zhang ★ 1.2k
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617
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Comment: Comment: Clusters in Differential Gene Expression Data
5 months ago by Zhenyu Zhang ★ 1.2k
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0
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453
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Answer: Answer: How to download BLCA.focal_score_by_genes.txt from GDC
5 months ago by Zhenyu Zhang ★ 1.2k
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0
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754
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Comment: Comment: How do I update the gene names of TCGA data correctly?
5 months ago by Zhenyu Zhang ★ 1.2k
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1
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518
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Answer: Answer: Bulk converting superseded TCGA UUIDs
5 months ago by Zhenyu Zhang ★ 1.2k
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0
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630
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Comment: Comment: How to Convert CNV Data to CNA Format for Reproducing Results with the Padma Pac
5 months ago by Zhenyu Zhang ★ 1.2k
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1
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630
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Comment: Comment: How to Convert CNV Data to CNA Format for Reproducing Results with the Padma Pac
6 months ago by Zhenyu Zhang ★ 1.2k
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0
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551
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Comment: Comment: Where to find old version of GATK best practice
6 months ago by Zhenyu Zhang ★ 1.2k
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0
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551
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Comment: Comment: Where to find old version of GATK best practice
6 months ago by Zhenyu Zhang ★ 1.2k
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4
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551
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Where to find old version of GATK best practice
gatk
6 months ago by Zhenyu Zhang ★ 1.2k
0
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0
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801
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Comment: Comment: How to handle duplicated genes in TCGA data?
6 months ago by Zhenyu Zhang ★ 1.2k
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0
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511
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Comment: Comment: Genotyping sites with N in reference genome
6 months ago by Zhenyu Zhang ★ 1.2k
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0
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495
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Comment: Comment: Extracting mutation status from MAF files - TCGA
6 months ago by Zhenyu Zhang ★ 1.2k
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0
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530
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Comment: Comment: Obtaining Infinium Methylation450K manifest for hg38
6 months ago by Zhenyu Zhang ★ 1.2k
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0
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375
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Answer: Answer: Nomalization - TCGA, RNA-seq and Microarray
6 months ago by Zhenyu Zhang ★ 1.2k
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0
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1.4k
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Comment: Comment: The GDC Legacy Archive is retiring soon.
6 months ago by Zhenyu Zhang ★ 1.2k
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1
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1.0k
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Comment: Comment: How to access TCGA samples that were treated with a specific drug?
6 months ago by Zhenyu Zhang ★ 1.2k
1
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2
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1.4k
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News: The GDC Legacy Archive is retiring soon.
genomic-data-commons tcga gdc
6 months ago by Zhenyu Zhang ★ 1.2k
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1.2k
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Comment: Comment: Method to detect genome doubling
7 months ago by Zhenyu Zhang ★ 1.2k
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465
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Comment: Comment: Are GeneExpression Subtype annotations removed from TCGA-GBM?
7 months ago by Zhenyu Zhang ★ 1.2k
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0
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340
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Answer: Answer: Human Methylation Infinum Bead - probe to gene mapping
7 months ago by Zhenyu Zhang ★ 1.2k
1
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0
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862
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Answer: Answer: Artificial deletion in bam
7 months ago by Zhenyu Zhang ★ 1.2k
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0
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536
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Answer: Answer: Help with finding Genomic coordinates and exon they belong to
7 months ago by Zhenyu Zhang ★ 1.2k
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0
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379
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Answer: Answer: Quantify the junction abundance?
7 months ago by Zhenyu Zhang ★ 1.2k
0
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1
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588
views
Answer: Answer: lncRNA from TCGA
7 months ago by Zhenyu Zhang ★ 1.2k
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