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Oburah
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python2.7 ROSE_main.py -g HG38 -i /home/hesborn/Desktop/Data/S3vS2-2.gff -r /home/hesborn/Downloads/possorted_bam.bam.bai -o Hezz -s 12…
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Try this example:
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We have been using SeSAMe, it works well for the most part. They have an enrichment tool called KnowYourCG. You can check it out their vign…
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> My final purpose are find and remove any identical sequences present in my genome fasta file.
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I think you have set a filter to get these pahways upstream from the DEG results. You should extract the IDs or names of the genes that you…
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Thank you for the response, I mean those tools aren't all the steps from fasta to vcf. Would be key understanding the aligner, reference us…
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Please accept the answer (green check mark) to provide closure to this thread.
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> A structural variation pipeline for short-read sequencing
https://github.com/broadinstitute/gatk-sv
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If it is just the tools that they used which you are looking for, the first link in the overview section of that page leads to the followin…
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It is just a warning that you add a new scale to a ggplot2 plot, that already has an existing one, which will get replaced. Nothing to worr…
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If you write me the code you used I can help you more
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When I run the code, the following message appears:
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In the case of other samples, the total number of genes is at least 3,000 more than that one, but it seems to be a relatively small number.…
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Command line is as follows:
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