Entering edit mode
21 days ago
Sudip
•
0
I am trying to extract all the genes that are present in a particular GO term in Arabidopsis. I was able to do so with this code,
go.trial <- getBM(attributes = c("ensembl_gene_id", "external_gene_name"),
filters = "go", values = "GO:0006779", mart = ensembl)
But now I want to do this for the KEGG pathways, Is the below code correct?
go.trial <- getBM(attributes = c("ensembl_gene_id", "external_gene_name"),
filters = "kegg", values = "ath03010", mart = ensembl)
Does it give you what you need?
No it does not. Do you know of a way that can help me achieve what I want?
Give us as much detail as you can. What error does it give you?