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361 results • Page 2 of 8
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3
votes
3
replies
956
views
Forum: Importance of Data Structures for Bioinformatics?
data-structures
updated 8 months ago by 43k • written 8 months ago by • 0
19
votes
14
replies
2.2k
views
Forum: What is the amount of sequencing data produced annually?
data research sequencing
updated 8 months ago by 22k • written 8 months ago by ▴ 70
19
votes
10
replies
1.6k
views
Forum: Pain points using commercial clouds
gpt tinybio
updated 8 months ago by ▴ 70 • written 8 months ago by ▴ 850
9
votes
6
replies
2.0k
views
6 follow
Forum: GTF files from Ensembl Releases 105 and 106 unsorted
Ensembl bug GTF
updated 8 months ago by 82k • written 18 months ago by ▴ 30
3
votes
2
replies
647
views
Forum: How to contribute to the next edition of Biostars Handbook
handbook
updated 8 months ago by 43k • written 8 months ago by ▴ 20
3
votes
6
replies
1.5k
views
6 follow
Forum: Is Bioinformatics a Professional Degree?
career degree
8 months ago by anasjamshed ▴ 120
2
votes
5
replies
975
views
6 follow
Forum: Biostar as a next generation version
meta mobile-app
updated 7 months ago by 43k • written 8 months ago by • 0
2
votes
9
replies
1.2k
views
Forum: open source projects looking for contributors
open-source
updated 8 months ago by ▴ 70 • written 8 months ago by ▴ 20
0
votes
0
replies
552
views
Forum: Recruiters: what do you expect on a junior bioinformatician?
career skills
updated 8 months ago by 43k • written 8 months ago by ▴ 20
3
votes
4
replies
1.4k
views
Forum: Discussion: Uploading terabytes of data to NCBI SRA
NCBI WGS archiving servers remote
updated 8 months ago by 142k • written 9 months ago by ▴ 130
0
votes
0
replies
589
views
Forum: I have a Master's and little experience in Bioinformatics - what would be the next best step?
career
updated 9 months ago by 43k • written 9 months ago by ▴ 10
1
vote
3
replies
805
views
Forum: Spaceranger missing spatial coordinates [Discussion]
Visium
updated 9 months ago by 142k • written 9 months ago by ▴ 550
11
votes
8
replies
1.4k
views
6 follow
Forum: How to write a review article in bioinformatics
article review
updated 8 months ago by 43k • written 9 months ago by ▴ 10
365
votes
58
replies
70k
views
44 follow
Forum: Recommend Your Favorite Bioinformatics Books
education books
updated 7 months ago by 43k • written 14.2 years ago by 100k
1
vote
2
replies
18k
views
Forum: Would you rather analyze a dataset with a strong, non-collinear batch effect, or a weak, collinear batch effect.
collinear latent batch-effect variable GLM
9 months ago by LauferVA 4.2k
0
votes
3
replies
3.9k
views
10 follow
Forum: Discussion question: Cutoff for SNP phylogeny
Phylogenetics SNP
written 17 months ago by ▴ 120
2
votes
3
replies
817
views
Forum: Purely analytic or in silico manuscripts that have significantly improved biological understanding
dry-lab
updated 10 months ago by 142k • written 10 months ago by 4.2k
0
votes
2
replies
1.3k
views
Forum: [Detailed Question] How to Normalize of Metagenomics Gene Abundances (with HMMs models)
normalization
updated 11 months ago by 10k • written 11 months ago by • 0
33
votes
23
replies
4.3k
views
8 follow
Forum: Is there a file format better suited for the era of pangenomics than the .vcf? What are its attributes?
VCF file-format genomics
updated 11 months ago by 22k • written 11 months ago by 4.2k
7
votes
8
replies
2.0k
views
Forum: Would solving many Rosalind problems show your ability for this field in job-wise?
rosalind career
11 months ago by K • 0
2
votes
3
replies
884
views
Forum: Mapping a predicted sequence to a genome
predicted map alignment sequence
updated 11 months ago by ★ 27k • written 11 months ago by • 0
0
votes
0
replies
457
views
Forum: Recommendation sought for differential exon usage of a single gene
splicing differential-exon-usage
updated 11 months ago by 43k • written 11 months ago by ▴ 10
7
votes
4
replies
1.1k
views
Forum: [Meta] Use of AI
AI Artificial-Intelligence meta ChatGPT
updated 11 months ago by 43k • written 11 months ago by 4.2k
2
votes
2
replies
617
views
Forum: Colleges
Colleges india universities
updated 11 months ago by 43k • written 11 months ago by • 0
19
votes
15
replies
2.0k
views
6 follow
Forum: Cross out line in Biostars
meta
updated 12 months ago by 43k • written 6.0 years ago by 5.3k
103
votes
42
replies
31k
views
34 follow
Forum: List of cloud genomics companies
cloud-genomics
updated 5 weeks ago by 22k • written 10.5 years ago by ★ 3.6k
4
votes
5
replies
1.4k
views
Forum: I'm looking for a mentor in Bioinformatics
mentor teaching
updated 3 months ago by • 0 • written 13 months ago by • 0
10
votes
15
replies
2.2k
views
Forum: How should reference genome fasta files be distributed by UCSC?
reference-genome fasta freeze ucsc-genome-browser
updated 11 months ago by 22k • written 14 months ago by ★ 1.6k
5
votes
4
replies
1.4k
views
Forum: Best BAM viewer in 2022
sam bam
updated 11 months ago by 43k • written 17 months ago by ▴ 70
1.2k
votes
206
replies
60k
views
108 follow
Forum: What Are The Most Common Stupid Mistakes In Bioinformatics?
software
updated 11 months ago by ★ 1.4k • written 13.1 years ago by 22k
15
votes
13
replies
4.3k
views
8 follow
Forum: Does a PhD or work experience set you up better to do bioinformatics work in industry?
advice industry phd
updated 4 months ago by 3.9k • written 18 months ago by ▴ 30
3
votes
2
replies
866
views
Forum: From protein-protein interaction networks to..
workflow computational knowledge limitations
updated 11 months ago by 43k • written 23 months ago by ▴ 50
3
votes
1
reply
936
views
Forum: How to download multiple .gz files from Ensembl Protists database
wget protist ensembl
updated 3 months ago by ★ 1.7k • written 2.2 years ago by ▴ 860
17
votes
14
replies
3.4k
views
Forum: Asking for feedback on a Python library for computing alignments
alignment Python
updated 11 months ago by ▴ 220 • written 2.3 years ago by ▴ 60
0
votes
1
reply
778
views
Forum: What are the most important papers/methods in Genomics/Bioinformatics of 2021?
publications
updated 11 months ago by 43k • written 2.4 years ago by ★ 2.5k
12
votes
7
replies
7.2k
views
Forum: Differences between SMART-seq2, SMART-seq3, and 10x
cell smartseq UMIs single 10x
updated 7 weeks ago by ★ 6.0k • written 2.7 years ago by ▴ 70
0
votes
0
replies
525
views
Forum: Poll about a structured description of a tool, a pipeline
survey pipeline
updated 11 months ago by 43k • written 2.8 years ago by • 0
0
votes
2
replies
791
views
Forum: A new data analytics platform for next gen sequencing
next-gen-sequencing RNA-Seq
updated 3 months ago by 43k • written 3.4 years ago by • 0
8
votes
1
reply
7.3k
views
Forum: What are chromatin states ?
genome ChIP-Seq
3 months ago by rohitsatyam102 ▴ 860
2
votes
6
replies
3.1k
views
Forum: RIP CentOS, CentOS 8 to be EOL'd in 2021
centos linux-distro os
updated 11 months ago by 43k • written 3.4 years ago by 11k
0
votes
0
replies
931
views
Forum: MAGs annotation tools
annotation genome
updated 11 months ago by 43k • written 4.3 years ago by ▴ 50
4
votes
5
replies
1.3k
views
Forum: Is Bioinformatics enough? Is it taken seriously?
career
updated 11 months ago by 43k • written 3.5 years ago by • 0
1
vote
2
replies
854
views
Forum: bioinformatics career choice - could use guidance
career
updated 11 months ago by 43k • written 3.5 years ago by • 0
19
votes
7
replies
1.3k
views
9 follow
Forum: DNA in pixels
genome alignment sequencing
updated 11 months ago by 43k • written 3.5 years ago by ▴ 30
0
votes
1
reply
590
views
Forum: What are the best online tutoring sites for biology help?
Biology
updated 11 months ago by 43k • written 3.5 years ago by • 0
4
votes
1
reply
731
views
Forum: Help with Bioinformatics Course
cancer
updated 11 months ago by 43k • written 3.6 years ago by • 0
0
votes
0
replies
711
views
Forum: Interview: Identifying the allelic expression of INDEL mutations
SNP RNA-Seq alignment
updated 11 months ago by 43k • written 3.6 years ago by • 0
73
votes
14
replies
4.3k
views
12 follow
Forum: Things you wish you knew when entering the bioinformatics field
pitfalls advice
updated 11 months ago by 43k • written 3.7 years ago by ★ 16k
0
votes
4
replies
1.0k
views
Forum: Genes inhibiting each other's expression
Gene-expression
updated 11 months ago by 43k • written 3.7 years ago by ▴ 60
9
votes
6
replies
1.5k
views
Forum: How to start my career in Bioinformatics
career
updated 11 months ago by 43k • written 3.7 years ago by ▴ 10
361 results • Page 2 of 8
Recent Votes
constructing pangenome through psvcp
Differential Expression with limma: Contrast and Design Matrix, combinatorial approach valid?
Differential Expression with limma: Contrast and Design Matrix, combinatorial approach valid?
Answer: RNAseq coverage vs depth for transcript isoform expression?
Answer: ChatGPT optimized for bioinformatics questions
Comment: ChatGPT optimized for bioinformatics questions
C: How can I perform Differential expression analysis with just one control and one
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Recent Replies
Comment: constructing pangenome through psvcp by analyst ▴ 50
Fixed the issue by updating nucmer version.
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU by GenoMax 142k
Can you create a small test database (`makeblastdb`) from your query file and try to run the search against the same file and see if that w…
Comment: calculating genomic coverage/ base overlap in R by 1769mkc ★ 1.2k
you can `dput(head(df)` for the both the data frame so that other can test for possible solutions
Comment: Broad and Narrow peaks by ATpoint 82k
What is your question? It's unclear.
Comment: Help with Biopython for Beginner by Joe 21k
One question before offering more solutions: are you trying to learn Python with this as an example problem, or are you trying to find the …
Answer: RNAseq coverage vs depth for transcript isoform expression? by Gordon Smyth ★ 7.2k
See the exploration of isoform precision vs read length and sequencing depth in our paper: https://doi.org/10.1093/nar/gkad1167. Table 1 o…
Comment: How to handle duplicated genes in TCGA data? by txema.heredia ▴ 130
Why does the tool require gene symbols and not ensembl ids? Is it retrieving information from somewhere else? If so, your best bet is to fi…
Comment: how to treat the replicates while performing WGCNA by mavy ▴ 10
Thank you so much for your response . Really appreciate it. I will try the way you mentioned and will get back if I have any query
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU by hophuquy0944 • 0
i have the same error, i used high performance computer, here is my code to set memory. srun --nodes=1 --ntasks=1 --cpus-per-task=24 -…
Comment: Overlapping Ranges within Granges object by Alex Reynolds 35k
Yes, `bedmap` will perform operations on one or two BED files.
Comment: B allele frequency (BAF) by aidangcruickshank ▴ 10
Apologies for resurrecting this post, but any idea what that functions "regions" paramater takes? Would it be a GRanges object? The documen…
Comment: How to handle duplicated genes in TCGA data? by Ngrin • 0
Thanks @txema.heredia.The tool I am going to use only accepts gene symbols. This is the reason. So I cannot use ENS IDs.
Answer: Design for complex RNA-Seq experiment using Deseq2 by swbarnes2 14k
This is a rather small experiment, I don't know that you can establish a meaningful baseline for each patient with a single pre sample, and…
Comment: GG Sankey plot by LauferVA 4.2k
@bk11 i changed this comment to an answer. if you disagree please let me know. thanks for sharing your knowledge. VAL
Comment: ComplexHeatmap - How to change fontsize of rowAnnotation by hannes.bongartz • 0
Thanks for the input. Unfortunately, that didn't help either. I appreciate any other tips. Thank you
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