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355 results • Page
2 of 8
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3
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3
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958
views
Forum:
Importance of Data Structures for Bioinformatics?
data-structures
updated 8 months ago by
Ram
43k • written 8 months ago by
S
• 0
19
votes
14
replies
2.2k
views
Forum:
What is the amount of sequencing data produced annually?
data
research
sequencing
updated 8 months ago by
Jeremy Leipzig
22k • written 8 months ago by
vincenthus
▴ 70
19
votes
10
replies
1.6k
views
Forum:
Pain points using commercial clouds
gpt
tinybio
updated 8 months ago by
vincenthus
▴ 70 • written 8 months ago by
Sasha
▴ 850
9
votes
6
replies
2.0k
views
6 follow
Forum:
GTF files from Ensembl Releases 105 and 106 unsorted
Ensembl
bug
GTF
updated 8 months ago by
ATpoint
82k • written 18 months ago by
dlaehnemann
▴ 30
3
votes
2
replies
650
views
Forum:
How to contribute to the next edition of Biostars Handbook
handbook
updated 8 months ago by
Ram
43k • written 8 months ago by
Fouad
▴ 20
3
votes
6
replies
1.5k
views
6 follow
Forum:
Is Bioinformatics a Professional Degree?
career
degree
8 months ago by
anasjamshed
▴ 120
2
votes
5
replies
980
views
6 follow
Forum:
Biostar as a next generation version
meta
mobile-app
updated 7 months ago by
Ram
43k • written 8 months ago by
rj.rezwan
• 0
2
votes
9
replies
1.2k
views
Forum:
open source projects looking for contributors
open-source
updated 8 months ago by
vincenthus
▴ 70 • written 8 months ago by
claudiofr
▴ 20
0
votes
0
replies
552
views
Forum:
Recruiters: what do you expect on a junior bioinformatician?
career
skills
updated 9 months ago by
Ram
43k • written 9 months ago by
gallardodiazmiriam
▴ 20
3
votes
4
replies
1.4k
views
Forum:
Discussion: Uploading terabytes of data to NCBI SRA
NCBI
WGS
archiving
servers
remote
updated 8 months ago by
GenoMax
142k • written 9 months ago by
James Reeve
▴ 130
0
votes
0
replies
590
views
Forum:
I have a Master's and little experience in Bioinformatics - what would be the next best step?
career
updated 9 months ago by
Ram
43k • written 9 months ago by
RM123
▴ 10
1
vote
3
replies
806
views
Forum:
Spaceranger missing spatial coordinates [Discussion]
Visium
updated 9 months ago by
GenoMax
142k • written 9 months ago by
morovatunc
▴ 550
11
votes
8
replies
1.4k
views
6 follow
Forum:
How to write a review article in bioinformatics
article
review
updated 8 months ago by
Ram
43k • written 9 months ago by
joey
▴ 10
365
votes
58
replies
70k
views
44 follow
Forum:
Recommend Your Favorite Bioinformatics Books
education
books
updated 7 months ago by
Ram
43k • written 14.2 years ago by
Istvan Albert
100k
1
vote
2
replies
18k
views
Forum:
Would you rather analyze a dataset with a strong, non-collinear batch effect, or a weak, collinear batch effect.
collinear
latent
batch-effect
variable
GLM
9 months ago by
LauferVA
4.2k
0
votes
3
replies
3.9k
views
10 follow
Forum:
Discussion question: Cutoff for SNP phylogeny
Phylogenetics
SNP
written 17 months ago by
SushiRoll
▴ 120
2
votes
3
replies
819
views
Forum:
Purely analytic or in silico manuscripts that have significantly improved biological understanding
dry-lab
updated 10 months ago by
GenoMax
142k • written 10 months ago by
LauferVA
4.2k
0
votes
2
replies
1.3k
views
Forum:
[Detailed Question] How to Normalize of Metagenomics Gene Abundances (with HMMs models)
normalization
updated 11 months ago by
Asaf
10k • written 11 months ago by
Davide
• 0
33
votes
23
replies
4.3k
views
8 follow
Forum:
Is there a file format better suited for the era of pangenomics than the .vcf? What are its attributes?
VCF
file-format
genomics
updated 11 months ago by
Jeremy Leipzig
22k • written 11 months ago by
LauferVA
4.2k
7
votes
8
replies
2.0k
views
Forum:
Would solving many Rosalind problems show your ability for this field in job-wise?
rosalind
career
11 months ago by
K
• 0
2
votes
3
replies
887
views
Forum:
Mapping a predicted sequence to a genome
predicted
map
alignment
sequence
updated 11 months ago by
Mensur Dlakic
★ 27k • written 11 months ago by
Andy
• 0
0
votes
0
replies
458
views
Forum:
Recommendation sought for differential exon usage of a single gene
splicing
differential-exon-usage
updated 11 months ago by
Ram
43k • written 11 months ago by
nick_b55
▴ 10
7
votes
4
replies
1.1k
views
Forum:
[Meta] Use of AI
AI
Artificial-Intelligence
meta
ChatGPT
updated 11 months ago by
Ram
43k • written 11 months ago by
LauferVA
4.2k
2
votes
2
replies
618
views
Forum:
Colleges
Colleges
india
universities
updated 11 months ago by
Ram
43k • written 11 months ago by
mahimanepalli36
• 0
19
votes
15
replies
2.1k
views
6 follow
Forum:
Cross out line in Biostars
meta
updated 12 months ago by
Ram
43k • written 6.0 years ago by
Bastien Hervé
5.3k
103
votes
42
replies
31k
views
34 follow
Forum:
List of cloud genomics companies
cloud-genomics
updated 5 weeks ago by
Jeremy Leipzig
22k • written 10.5 years ago by
14134125465346445
★ 3.6k
4
votes
5
replies
1.4k
views
Forum:
I'm looking for a mentor in Bioinformatics
mentor
teaching
updated 3 months ago by
alva
• 0 • written 13 months ago by
cwaingartentrabajo
• 0
10
votes
15
replies
2.2k
views
Forum:
How should reference genome fasta files be distributed by UCSC?
reference-genome
fasta
freeze
ucsc-genome-browser
updated 11 months ago by
Jeremy Leipzig
22k • written 15 months ago by
Maximilian Haeussler
★ 1.6k
5
votes
4
replies
1.4k
views
Forum:
Best BAM viewer in 2022
sam
bam
updated 11 months ago by
Ram
43k • written 17 months ago by
Cornelius
▴ 70
1.2k
votes
206
replies
60k
views
108 follow
Forum:
What Are The Most Common Stupid Mistakes In Bioinformatics?
software
updated 11 months ago by
Raony Guimarães
★ 1.4k • written 13.1 years ago by
Jeremy Leipzig
22k
15
votes
13
replies
4.3k
views
8 follow
Forum:
Does a PhD or work experience set you up better to do bioinformatics work in industry?
advice
industry
phd
updated 4 months ago by
benformatics
3.9k • written 18 months ago by
buhbs
▴ 30
3
votes
2
replies
869
views
Forum:
From protein-protein interaction networks to..
workflow
computational
knowledge
limitations
updated 11 months ago by
Ram
43k • written 23 months ago by
BioInfoBeginner
▴ 50
3
votes
1
reply
937
views
Forum:
How to download multiple .gz files from Ensembl Protists database
wget
protist
ensembl
updated 3 months ago by
BioinfGuru
★ 1.7k • written 2.2 years ago by
rohitsatyam102
▴ 870
17
votes
14
replies
3.4k
views
Forum:
Asking for feedback on a Python library for computing alignments
alignment
Python
updated 11 months ago by
Alexander
▴ 220 • written 2.3 years ago by
bernhard.liebl
▴ 60
0
votes
1
reply
779
views
Forum:
What are the most important papers/methods in Genomics/Bioinformatics of 2021?
publications
updated 11 months ago by
Ram
43k • written 2.4 years ago by
carlopecoraro2
★ 2.5k
12
votes
7
replies
7.3k
views
Forum:
Differences between SMART-seq2, SMART-seq3, and 10x
cell
smartseq
UMIs
single
10x
updated 7 weeks ago by
dsull
★ 6.0k • written 2.7 years ago by
hamarillo
▴ 70
0
votes
0
replies
525
views
Forum:
Poll about a structured description of a tool, a pipeline
survey
pipeline
updated 11 months ago by
Ram
43k • written 2.8 years ago by
Anastasiya M
• 0
0
votes
2
replies
791
views
Forum:
A new data analytics platform for next gen sequencing
next-gen-sequencing
RNA-Seq
updated 3 months ago by
Ram
43k • written 3.4 years ago by
thezgabby
• 0
8
votes
1
reply
7.3k
views
Forum:
What are chromatin states ?
genome
ChIP-Seq
3 months ago by
rohitsatyam102
▴ 870
2
votes
6
replies
3.1k
views
Forum:
RIP CentOS, CentOS 8 to be EOL'd in 2021
centos
linux-distro
os
updated 11 months ago by
Ram
43k • written 3.4 years ago by
5heikki
11k
0
votes
0
replies
931
views
Forum:
MAGs annotation tools
annotation
genome
updated 11 months ago by
Ram
43k • written 4.3 years ago by
willnotburn
▴ 50
4
votes
5
replies
1.3k
views
Forum:
Is Bioinformatics enough? Is it taken seriously?
career
updated 11 months ago by
Ram
43k • written 3.5 years ago by
neelk1123
• 0
1
vote
2
replies
855
views
Forum:
bioinformatics career choice - could use guidance
career
updated 11 months ago by
Ram
43k • written 3.5 years ago by
ssc229
• 0
19
votes
7
replies
1.3k
views
9 follow
Forum:
DNA in pixels
genome
alignment
sequencing
updated 11 months ago by
Ram
43k • written 3.5 years ago by
mervsen
▴ 30
0
votes
1
reply
592
views
Forum:
What are the best online tutoring sites for biology help?
Biology
updated 11 months ago by
Ram
43k • written 3.5 years ago by
hendersonken325
• 0
4
votes
1
reply
731
views
Forum:
Help with Bioinformatics Course
cancer
updated 11 months ago by
Ram
43k • written 3.7 years ago by
deemassh
• 0
0
votes
0
replies
711
views
Forum:
Interview: Identifying the allelic expression of INDEL mutations
SNP
RNA-Seq
alignment
updated 11 months ago by
Ram
43k • written 3.6 years ago by
adglink
• 0
73
votes
14
replies
4.3k
views
12 follow
Forum:
Things you wish you knew when entering the bioinformatics field
pitfalls
advice
updated 11 months ago by
Ram
43k • written 3.7 years ago by
jared.andrews07
★ 16k
0
votes
4
replies
1.0k
views
Forum:
Genes inhibiting each other's expression
Gene-expression
updated 11 months ago by
Ram
43k • written 3.7 years ago by
priya.bmg
▴ 60
9
votes
6
replies
1.5k
views
Forum:
How to start my career in Bioinformatics
career
updated 11 months ago by
Ram
43k • written 3.7 years ago by
Sashi G
▴ 10
355 results • Page
2 of 8
Recent Votes
Sequence alignment on split read event such as inversion, duplication and complex nested events.
ICGEB - SLIBTEC NGS Workshop: Won Best Oral Presentation Award
Comment: Add stats to the plot
Post-doctoral Position in Alzheimer’s Disease Genetics, ‘Omics, and Biomarkers
The Biostar Handbook. A bioinformatics e-book for beginners.
Answer: How to add Ensembl id to cluster.markers in Seurat
How to add Ensembl id to cluster.markers in Seurat
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Recent Awards •
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Recent Replies
Comment: BiomartException: Query ERROR for existing dataset in BioMart
by
Luqman
• 0
I am using *pybiomart* which has Server inplace of BiomartServer, I used that as per above but still getting the same error. Also, when I a…
Comment: Blastn, need help to increase speed
by
m13113153781
• 0
mmseq2 is indeed a good acceleration solution, but its index files require ~ 6 T space....
Answer: seqtk subseq in.fastq list.txt > out.fastq not extracting full sequence from
by
KHURRAM SHAHZAD
• 0
Thank you it works
Answer: Add stats to the plot
by
Ghada
• 0
I think this is what caused the error. we do not have group 1 and 2 in the statistical test results???? ![enter image description here][…
Answer: scRNA-seq data trained model can be used for predictions on bulk RNA-seq data?
by
Bibi
• 0
@atpoint thanks you for your timely response. Can someone else shed light if we can compare the trend of DEGs using the scRNA and Bulk RNA…
Comment: Add stats to the plot
by
GenoMax
142k
Please use `101010` to format `code` so it is represented in monospace font. I have done this for you now.
Answer: is there a tool to recover corrupted fastq files
by
Tommaso
• 0
You may also want to give a try to **FastqWiper** (https://github.com/mazzalab/fastqwiper)
Comment: Add stats to the plot
by
Ghada
• 0
Thanks. That helpful. I am getting this error data4_test <- data4.ts%>% ungroup() %>% t.test(data =.,value ~ Condition)%>% + …
Comment: scRNA-seq data trained model can be used for predictions on bulk RNA-seq data?
by
ATpoint
82k
I cannot comment here. You are asking why results between two experiments are different. I do not know without seeing the data.
Comment: scRNA-seq data trained model can be used for predictions on bulk RNA-seq data?
by
Bibi
• 0
Thank you so much for this insight. I just want to clarify another point here. I have used scRNA seq data from mice mammary epithelial cell…
Comment: Is it Possible to "Merge" data from Replicates within a VCF SNP File
by
Pierre Lindenbaum
161k
> Cannot read non-existent file: file:///local/home/User/VCF_Filtering/biostar.code your file doesn't exist, is at the wrong place etc.
Comment: Is it Possible to "Merge" data from Replicates within a VCF SNP File
by
ajbarrett98
• 0
Hi Pierre, I am attempting to run this code and am running into this error: (jvar) $ jvarkit vcffilterjdk -f biostar.code Dart_VCF2_Or…
Comment: scRNA-seq data trained model can be used for predictions on bulk RNA-seq data?
by
ATpoint
82k
I cannot give a precise answer, as ML is not my field, but generally, why don't you apply the method to pseudobulks of the exact single-cel…
Answer: geom_bar issue in ggplot2 with xlim()
by
ATpoint
82k
https://stackoverflow.com/questions/10365167/geom-bar-bars-not-displaying-when-specifying-ylim
Comment: What marks a De-Novo Genome assembly as FAILED?
by
Umer
▴ 50
Yes. We are sequencing 45 different samples with illumina. 12 of these are also going to be sequenced with Nanopore (for hybrid assembly). …
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