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4
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Forum: Best BAM viewer in 2022
sam bam
updated 11 months ago by 43k • written 17 months ago by ▴ 70
1.2k
votes
206
replies
60k
views
108 follow
Forum: What Are The Most Common Stupid Mistakes In Bioinformatics?
software
updated 11 months ago by ★ 1.4k • written 13.1 years ago by 22k
15
votes
13
replies
4.3k
views
8 follow
Forum: Does a PhD or work experience set you up better to do bioinformatics work in industry?
advice industry phd
updated 4 months ago by 3.9k • written 18 months ago by ▴ 30
0
votes
2
replies
1.0k
views
Forum: Best Phd Programs in Usa ( Computational Biology)
computational-biology drug-design
updated 17 months ago by 43k • written 19 months ago by • 0
4
votes
5
replies
1.4k
views
6 follow
Forum: Which Bioinformatics Master's degree is better?
career masters
updated 12 months ago by 43k • written 18 months ago by • 0
2
votes
1
reply
882
views
Forum: Package is not available (for R version XXX)？ Manually download and install R packages
installation package R
updated 16 months ago by 6.4k • written 19 months ago by ▴ 30
3
votes
6
replies
1.1k
views
Forum: How to become a moderator and other ways of contributing to Biostars
meta biostars
updated 12 months ago by 43k • written 19 months ago by 6.2k
2
votes
3
replies
962
views
Forum: Experiences with different cloud computing resources / providers
cloud pipeline rna-seq alignment
updated 20 months ago by 22k • written 20 months ago by ▴ 10
19
votes
13
replies
2.7k
views
8 follow
Forum: Can bioinformatics Phds be completely or almost completely done remotely?
PhD
updated 20 months ago by 6.6k • written 20 months ago by ▴ 40
8
votes
13
replies
2.9k
views
8 follow
Forum: Commercial software for genomics / NGS / bioinformatics
NGS software genomics
updated 20 months ago by • 0 • written 20 months ago by ★ 1.4k
4
votes
4
replies
1.4k
views
Forum: Bioinformatics analogies
Bioinformatics
updated 20 months ago by 100k • written 20 months ago by ▴ 70
2
votes
4
replies
1.2k
views
Forum: Is low N in-vivo research a blind spot for RNA-seq?
statistics metascience power sample-size
updated 13 months ago by 43k • written 20 months ago by ▴ 230
2
votes
4
replies
1.0k
views
Forum: strand specific data
strand DNA RNA specific coding
20 months ago by upasana • 0
3
votes
0
replies
833
views
Forum: Let's build a list of Drug Databases including Tyrosine Kinase Inhibitors: Update 1
pharmacology RTK IC50 TKI database
21 months ago by LauferVA 4.2k
7
votes
14
replies
2.5k
views
7 follow
Forum: Why isn't GWAS used in oncology?
gwas association oncology studies somatic cancer
updated 21 months ago by 3.9k • written 21 months ago by ▴ 90
4
votes
4
replies
1.4k
views
Forum: Cloud Computing Services available?
resources Cloud-Computing
updated 17 months ago by 43k • written 22 months ago by ★ 2.5k
2
votes
7
replies
1.3k
views
Forum: Build a Visual Analytic App for Rna-seq data [Ideas Accepted]
R plot rna-seq count
updated 22 months ago by 43k • written 22 months ago by ▴ 20
6
votes
3
replies
2.3k
views
Forum: Best formats for storing large amounts of data for random access
file-formats databases
updated 22 months ago by 4.6k • written 22 months ago by 19k
0
votes
1
reply
641
views
Forum: Add an intercept column to a bed file
plink intercept bed
updated 22 months ago by 82k • written 22 months ago by • 0
4
votes
2
replies
1.9k
views
Forum: Best resource for getting a person with a Math/Comp Sci background the right amount of Biology knowledge
biology teaching
updated 17 months ago by 43k • written 22 months ago by 4.2k
0
votes
0
replies
756
views
Forum: Normalization of ChIP-seq _ Spikein normalization + RPGC
ChIP-seq normalization RPGC Spikein Normalization
22 months ago by goddy93 • 0
3
votes
1
reply
705
views
Forum: Would an automated NGS analytics platform help research?
ngs data-analysis
updated 22 months ago by 43k • written 22 months ago by • 0
5
votes
2
replies
1.7k
views
Forum: Skills for industry career in bioinformatics
industry
updated 22 months ago by 13k • written 22 months ago by ▴ 10
9
votes
6
replies
1.3k
views
Forum: Programming languages in industry
programming language
updated 22 months ago by 9.7k • written 22 months ago by ▴ 30
2
votes
6
replies
1.3k
views
Forum: Getting the best of RNA-Seq
RNA-Seq isoform gene expression
23 months ago by Antonio R. Franco ★ 5.1k
1
vote
0
replies
816
views
Forum: Not all Over Representation Analyses are the same!
clusterProfiler Analysis fisher hypergeometric ORA Pathway
23 months ago by Francesco ▴ 20
3
votes
2
replies
869
views
Forum: From protein-protein interaction networks to..
workflow computational knowledge limitations
updated 11 months ago by 43k • written 23 months ago by ▴ 50
0
votes
0
replies
763
views
Forum: Best practices for merging vcfs with different positions + different samples?
vcf bcftools genotypes
updated 17 months ago by 43k • written 23 months ago by ▴ 30
24
votes
6
replies
5.0k
views
6 follow
Forum: Awk in Bioinformatics
perl awk shell
updated 17 months ago by 43k • written 5.7 years ago by ★ 9.4k
7
votes
8
replies
1.6k
views
Forum: Can we lock posts related to merging vcf files?
vcf
updated 17 months ago by 43k • written 23 months ago by 2.8k
0
votes
0
replies
654
views
Forum: Bioinformatics for understanding cancer and other diseases
cancer omics
updated 17 months ago by 43k • written 23 months ago by ★ 1.5k
1
vote
3
replies
2.6k
views
Forum: What counts as a valid biological replicate in single cell RNAseq?
statistics biological replicates scRNA-seq
updated 23 months ago by 3.9k • written 23 months ago by • 0
3
votes
3
replies
957
views
Forum: Looking for a PostDoc position in ML-heavy medical bioinformatics in Germany
Germany PostDoc
updated 23 months ago by 27k • written 23 months ago by ★ 2.9k
0
votes
0
replies
381
views
Forum: Can Bioinformatics be used in developing a product?
product company business
updated 17 months ago by 43k • written 24 months ago by ▴ 20
0
votes
2
replies
1.2k
views
Forum: Bioinformatics algorithm tutorials in C++/C
protein gene genome
updated 24 months ago by 54k • written 24 months ago by ▴ 980
34
votes
11
replies
9.4k
views
13 follow
Forum: Gallery: Computational tools for DNA methylation
computational-tools methylation
updated 21 months ago by 43k • written 8.5 years ago by ★ 9.4k
6
votes
8
replies
3.1k
views
Forum: PC build for Nanopore data analysis
python PC pipeline nanopore-sequencing
24 months ago by stan.aanhane ▴ 30
2
votes
3
replies
959
views
Forum: What is difference between Bioinformatics and Data Science?
Data-Science
updated 17 months ago by 43k • written 2.0 years ago by ▴ 30
2
votes
2
replies
956
views
Forum: Project ideas
project-ideas
updated 2.0 years ago by 54k • written 2.0 years ago by • 0
0
votes
0
replies
587
views
Forum: Beagle5 imputation accuracy
beagle5 DR2 imputation impute2 impute-info
2.0 years ago by ch333 • 0
1
vote
6
replies
1.1k
views
Forum: Bioinformatics Software Developer job interview steps and what to expect?
interview software-development
updated 23 months ago by 43k • written 2.0 years ago by • 0
2
votes
2
replies
798
views
Forum: What sequencing method is the most efficient for identifying genes driving rare diseases?
NGS GWAS WGS
updated 17 months ago by 43k • written 2.1 years ago by • 0
5
votes
5
replies
1.1k
views
Forum: Best book introducing R programming?
coding R
2.1 years ago by Scottie ▴ 10
4
votes
6
replies
1.6k
views
Forum: How relevant are read numbers in FastQ headers for paired reads?
header fastq number read
2.1 years ago by Matthias Zepper 4.6k
0
votes
0
replies
631
views
Forum: commonly-used bioinformatics pipeline
Galaxy
updated 17 months ago by 43k • written 2.1 years ago by ▴ 120
0
votes
0
replies
573
views
Forum: Master's topic in Bioinformatics
Bio-informatique
2.1 years ago by Badji Oumar • 0
13
votes
15
replies
3.4k
views
8 follow
Forum: Biostar under spam attack - restrictions added to post content and title
meta biostars
updated 15 months ago by 43k • written 8.9 years ago by 100k
0
votes
1
reply
812
views
Forum: Retrieve SCCM data for client software distribution serviceNow
training servicenow online
2.1 years ago by hkrtrainings408 • 0
47
votes
24
replies
6.6k
views
15 follow
Forum: What's fascinating about Bioinformatics for potential students?
career msc
updated 17 months ago by 43k • written 6.6 years ago by 54k
5
votes
8
replies
2.8k
views
Forum: SQL-why do we need it in Bioinformatics ?
SQL Programming
updated 17 months ago by 43k • written 2.1 years ago by ▴ 10
1,000 results • Page 3 of 20
Recent Votes
Comment: Add stats to the plot
Post-doctoral Position in Alzheimer’s Disease Genetics, ‘Omics, and Biomarkers
The Biostar Handbook. A bioinformatics e-book for beginners.
Answer: How to add Ensembl id to cluster.markers in Seurat
How to add Ensembl id to cluster.markers in Seurat
Comment: Duplicated sequence samtools
Answer: Duplicated sequence samtools
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Scholar to Pierre Lindenbaum 161k
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Recent Replies
Answer: Add stats to the plot by Ghada • 0
I think this is what caused the error. we do not have group 1 and 2 in the statistical test results???? ![enter image description here][…
Answer: scRNA-seq data trained model can be used for predictions on bulk RNA-seq data? by Bibi • 0
@atpoint thanks you for your timely response. Can someone else shed light if we can compare the trend of DEGs using the scRNA and Bulk RNA…
Comment: Add stats to the plot by GenoMax 142k
Please use `101010` to format `code` so it is represented in monospace font. I have done this for you now.
Answer: is there a tool to recover corrupted fastq files by Tommaso • 0
You may also want to give a try to **FastqWiper** (https://github.com/mazzalab/fastqwiper)
Comment: Add stats to the plot by Ghada • 0
Thanks. That helpful. I am getting this error data4_test <- data4.ts%>% ungroup() %>% t.test(data =.,value ~ Condition)%>% + …
Comment: scRNA-seq data trained model can be used for predictions on bulk RNA-seq data? by ATpoint 82k
I cannot comment here. You are asking why results between two experiments are different. I do not know without seeing the data.
Comment: scRNA-seq data trained model can be used for predictions on bulk RNA-seq data? by Bibi • 0
Thank you so much for this insight. I just want to clarify another point here. I have used scRNA seq data from mice mammary epithelial cell…
Comment: Is it Possible to "Merge" data from Replicates within a VCF SNP File by Pierre Lindenbaum 161k
> Cannot read non-existent file: file:///local/home/User/VCF_Filtering/biostar.code your file doesn't exist, is at the wrong place etc.
Comment: Is it Possible to "Merge" data from Replicates within a VCF SNP File by ajbarrett98 • 0
Hi Pierre, I am attempting to run this code and am running into this error: (jvar) $ jvarkit vcffilterjdk -f biostar.code Dart_VCF2_Or…
Comment: scRNA-seq data trained model can be used for predictions on bulk RNA-seq data? by ATpoint 82k
I cannot give a precise answer, as ML is not my field, but generally, why don't you apply the method to pseudobulks of the exact single-cel…
Answer: geom_bar issue in ggplot2 with xlim() by ATpoint 82k
https://stackoverflow.com/questions/10365167/geom-bar-bars-not-displaying-when-specifying-ylim
Comment: What marks a De-Novo Genome assembly as FAILED? by Umer ▴ 50
Yes. We are sequencing 45 different samples with illumina. 12 of these are also going to be sequenced with Nanopore (for hybrid assembly). …
Comment: HGVS Nomenclature of Multiple Indels found in Cis by LauferVA 4.2k
how has this code progressed? is it publically available? would you want to work together?
Comment: Design for complex RNA-Seq experiment using Deseq2 by Ezequiel • 0
I completely agree with most points. The PCA shows that the biggest driver of difference is the patients themselves, with PRE and POST time…
Comment: Add stats to the plot by marco.barr ▴ 130
Hi, you can add statistical annotations using `ggpubr` function `stat_pvalue_manual `. You need to make sure you calculate the p-values fir…
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