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1,000 results • Page
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13
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9
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2.7k
views
7 follow
News:
Inviting NEW Biostars moderators to join Biostars slack channel
slack
moderator
7 months ago by
GenoMax
142k
13
votes
2
replies
3.1k
views
News:
A Summary Of All Encode Related News On The Openhelix Blog: Encode Floods The News
encode
updated 15 months ago by
Ram
43k • written 11.7 years ago by
Istvan Albert
100k
13
votes
8
replies
2.7k
views
News:
NCBI is going to eliminate GI identifiers
ncbi
GI
updated 13 months ago by
Ram
43k • written 8.2 years ago by
Anima Mundi
★ 2.9k
13
votes
2
replies
1.5k
views
News:
Thank you Biostars!
meta
updated 11 months ago by
Ram
43k • written 5.0 years ago by
Glory Basumata
▴ 140
12
votes
2
replies
518
views
News:
8th Berlin Summer School in NGS Data Analysis (June 10-14, 2024) - already half booked
Workshop
RNA-Seq
DNA-Seq
Illumina
5 weeks ago by
David Langenberger
11k
12
votes
2
replies
1.5k
views
News:
Free online Ensembl course, now with a fixed sign-up link
ensembl
course
training
updated 13 months ago by
Ram
43k • written 7.2 years ago by
Emily
23k
12
votes
7
replies
3.9k
views
News:
Welcome Ensembl REST with more endpoints!
ensembl
rest-api
updated 14 months ago by
Ram
43k • written 9.6 years ago by
Denise CS
★ 5.2k
12
votes
4
replies
2.1k
views
News:
#NGSchool2018 summer school in bioinformatics
NGSchool
Personalised-Medicine
Nanopore
updated 12 months ago by
Ram
43k • written 6.0 years ago by
kzkedzierska
▴ 290
12
votes
3
replies
2.5k
views
News:
Google Summer of Code and Open Bioinformatics Foundation is looking for students
GSoC
open-source
updated 13 months ago by
Ram
43k • written 8.2 years ago by
Philipp Bayer
8.5k
12
votes
8
replies
7.2k
views
News:
rRNA Depletion / Poly-A Selection Responsible for RNA-seq Bias
rRNA-depletion
RNA-seq-bias
updated 14 months ago by
Ram
43k • written 9.9 years ago by
support
▴ 650
12
votes
0
replies
3.3k
views
News:
Looking For Feedback On The Json Output For Ncbi E-Utilities
ncbi
eutils
updated 15 months ago by
Ram
43k • written 11.5 years ago by
Chris Maloney
▴ 360
12
votes
17
replies
4.2k
views
6 follow
News:
A programming language for living cells [Cello]
dna
sequence
research
language
updated 13 months ago by
Ram
43k • written 8.1 years ago by
Sukhi Singh
11k
12
votes
8
replies
3.5k
views
News:
'Potential Rna-Dna Binding Site In Alu Repeat', Or 'Why Should I Allow Multiple Mapping Positions When Analyzing Chipseq Data?'
chipseq
rna
updated 14 months ago by
Ram
43k • written 10.9 years ago by
David Langenberger
11k
11
votes
2
replies
2.4k
views
News:
Ensembl 76 is out
Genome-browser
Ensembl
updated 2.4 years ago by
Ram
43k • written 9.8 years ago by
Emily
23k
11
votes
25
replies
6.3k
views
15 follow
News:
Questions for the NCBI Next Generation Sequencing Online Workshop Can be Posted with the NCBI_NOW Tag
NCBI_NOW
updated 13 months ago by
Ram
43k • written 8.6 years ago by
DCGenomics
▴ 330
11
votes
13
replies
3.2k
views
News:
Ensembl datacentre shut-down: Friday 26th August - Tuesday 30th August 2016
Maintenance
Ensembl
updated 13 months ago by
Ram
43k • written 7.7 years ago by
Ben_Ensembl
★ 2.4k
11
votes
1
reply
4.2k
views
News:
GATB will provide developer support via Biostar
minia
dsk
gatb
updated 2.3 years ago by
Ram
43k • written 10.0 years ago by
Rayan Chikhi
★ 1.5k
11
votes
1
reply
2.9k
views
News:
NGS Data Analysis Workshop for Beginners in Munich (full)
RNA-Seq
training
NGS
workshop
updated 22 months ago by
Ram
43k • written 7.8 years ago by
David Langenberger
11k
11
votes
2
replies
3.7k
views
News:
Coursera: Computational Molecular Evolution
course
updated 15 months ago by
Ram
43k • written 11.0 years ago by
Pierre Lindenbaum
161k
11
votes
9
replies
7.8k
views
News:
NovaSeq quality analysis
sequencing
updated 12 months ago by
Ram
43k • written 6.9 years ago by
Brian Bushnell
20k
11
votes
11
replies
1.8k
views
8 follow
News:
Python Data Visualization Course. Last 3 spots left
next-gen
updated 12 months ago by
Ram
43k • written 5.5 years ago by
carlopecoraro2
★ 2.5k
11
votes
0
replies
3.3k
views
News:
BWA 0.7.11 is out, supports ALT contigs
BWA
updated 14 months ago by
Ram
43k • written 9.4 years ago by
Devon Ryan
104k
11
votes
2
replies
1.5k
views
News:
ASA discusses limitations of p-values what are the alternatives?
statistics
p-value
updated 13 months ago by
Ram
43k • written 8.2 years ago by
dariober
14k
11
votes
1
reply
2.1k
views
News:
Upcoming Hands-On Workshop: De Novo Transcriptome Assembly and Analysis
Workshop
Assembly
RNA-Seq
updated 13 months ago by
Ram
43k • written 8.0 years ago by
David Langenberger
11k
10
votes
7
replies
2.4k
views
News:
Free draft copy of book on bioinformatics tools
alignment
Assembly
RNA-seq
next-gen
updated 16 months ago by
Ram
43k • written 9.0 years ago by
ugly.betty77
★ 1.1k
10
votes
4
replies
1.8k
views
News:
3rd Berlin Summer School in NGS Data Analysis (2 seats just became available)
NGS
RNA-Seq
DNA-Seq
updated 11 months ago by
Ram
43k • written 5.3 years ago by
David Langenberger
11k
10
votes
17
replies
3.4k
views
7 follow
News:
Tell us what you think of the ENA browser?
ena
updated 13 months ago by
Ram
43k • written 7.5 years ago by
Laura
★ 1.8k
10
votes
4
replies
2.7k
views
News:
Ensembl 77 is out
ensembl
updated 2.3 years ago by
Ram
43k • written 9.6 years ago by
Emily
23k
10
votes
4
replies
1.3k
views
News:
RNA-Seq Data Analysis Workshop - Join us in Berlin, Germany from March 27-30, 2023!
NGS
transcriptomics
workshop
updated 14 months ago by
kng
▴ 30 • written 15 months ago by
David Langenberger
11k
10
votes
7
replies
2.9k
views
News:
Linux for Biologists e-book (free to read online)
linux
python
galaxy
conda
virtual-machine
2.6 years ago by
vimalkvn
▴ 320
10
votes
1
reply
3.1k
views
News:
Ucsc: Dna Sequences In Web Pages Indexed By Bing.Com / Microsoft Research (All Phenotype And Literature Tracks)
web
ucsc
updated 14 months ago by
Ram
43k • written 10.3 years ago by
Pierre Lindenbaum
161k
10
votes
4
replies
1.0k
views
News:
Good morning
good
morning
updated 20 months ago by
Istvan Albert
100k • written 20 months ago by
Kevin Blighe
88k
10
votes
1
reply
2.0k
views
News:
Run on 1st Berlin Summer School in NGS Data Analysis
DNA-Seq
RNA-Seq
NGS
updated 13 months ago by
Ram
43k • written 7.3 years ago by
David Langenberger
11k
10
votes
0
replies
2.1k
views
News:
Pan-Cancer Analysis of RNA Binding Proteins in ~7000 tumor samples
Pan-Cancer
mutations
TCGA
RNA-seq
cancer-driver
updated 12 months ago by
Ram
43k • written 6.3 years ago by
lsp03yjh
▴ 860
10
votes
0
replies
3.4k
views
News:
1000 Genomes data on GRCh38
1000Genomes
GRCh38
alts
alignment
updated 20 months ago by
Ram
43k • written 8.6 years ago by
fairley
▴ 100
10
votes
0
replies
2.9k
views
News:
Cfp: Camda 2013 Challenge: Big Data In Life Sciences
ngs
conference
updated 15 months ago by
Ram
43k • written 11.2 years ago by
okko.clevert
▴ 240
10
votes
2
replies
3.3k
views
News:
Biostars based Q&A for Bioconductor: http://support.bioconductor.org
RNA-Seq
bioconductor
updated 2.4 years ago by
Ram
43k • written 9.7 years ago by
Pierre Lindenbaum
161k
9
votes
6
replies
2.2k
views
News:
No more hidden solutions in bioinformatics
precision-medicine
genome-sequencing
updated 16 months ago by
Ram
43k • written 9.0 years ago by
HG
★ 1.2k
9
votes
4
replies
2.5k
views
7 follow
News:
fastp 0.22 released, with new FASTQ deduplication feature.
fastp
updated 9 months ago by
Ram
43k • written 2.7 years ago by
chen
★ 2.5k
9
votes
5
replies
3.1k
views
News:
The NIH Software Discovery Index | We invite your comments
NIH
software-catalog
updated 2.3 years ago by
Ram
43k • written 9.6 years ago by
Sean Davis
26k
9
votes
5
replies
10k
views
8 follow
News:
Online course: Learn Bioinformatics in 100 hours
biostars
online-course
updated 15 months ago by
Ram
43k • written 6.7 years ago by
Istvan Albert
100k
9
votes
5
replies
3.7k
views
News:
SAMTOOLS 1.4 released
samtools
updated 12 months ago by
Ram
43k • written 7.2 years ago by
Pierre Lindenbaum
161k
9
votes
3
replies
4.8k
views
News:
Bioinformatics Contest 2020. Call for problems
contest
updated 11 months ago by
Ram
43k • written 4.7 years ago by
alserg
▴ 930
9
votes
4
replies
1.6k
views
News:
Human Cell Atlas Data Coordination Platform Data Release Questionaire
RNA-Seq
updated 12 months ago by
Ram
43k • written 6.2 years ago by
Laura
★ 1.8k
9
votes
2
replies
14k
views
News:
Bio-Linux 8 is now available
genome
rna-seq
alignment
Assembly
next-gen
updated 2.4 years ago by
Ram
43k • written 9.8 years ago by
rtliu
★ 2.2k
9
votes
3
replies
3.3k
views
News:
New Human Genome Assembly (Grch38) Released
human-genome
assembly
updated 14 months ago by
Ram
43k • written 10.4 years ago by
Pierre Lindenbaum
161k
9
votes
0
replies
2.2k
views
News:
Commercial advertising on Biostars
meta
biostars
advertising
updated 14 months ago by
Ram
43k • written 9.6 years ago by
Istvan Albert
100k
9
votes
4
replies
3.7k
views
News:
Conference Announcement - Camda 2013
conference
classification
updated 15 months ago by
Ram
43k • written 11.4 years ago by
okko.clevert
▴ 240
9
votes
5
replies
8.8k
views
News:
A New Rest Based Api For Kegg: Kyoto Encyclopedia Of Genes And Genomes
kegg
api
updated 15 months ago by
Ram
43k • written 11.5 years ago by
wchknudt
▴ 50
8
votes
0
replies
2.2k
views
News:
A Call To Create Listings Of The Best Review Papers
papers
updated 15 months ago by
Ram
43k • written 11.7 years ago by
Istvan Albert
100k
1,000 results • Page
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Recent Votes
Comment: Add stats to the plot
Post-doctoral Position in Alzheimer’s Disease Genetics, ‘Omics, and Biomarkers
The Biostar Handbook. A bioinformatics e-book for beginners.
Answer: How to add Ensembl id to cluster.markers in Seurat
How to add Ensembl id to cluster.markers in Seurat
Comment: Duplicated sequence samtools
Answer: Duplicated sequence samtools
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Recent Awards •
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Answer: seqtk subseq in.fastq list.txt > out.fastq not extracting full sequence from
by
KHURRAM SHAHZAD
• 0
Thank you it works
Answer: Add stats to the plot
by
Ghada
• 0
I think this is what caused the error. we do not have group 1 and 2 in the statistical test results???? ![enter image description here][…
Answer: scRNA-seq data trained model can be used for predictions on bulk RNA-seq data?
by
Bibi
• 0
@atpoint thanks you for your timely response. Can someone else shed light if we can compare the trend of DEGs using the scRNA and Bulk RNA…
Comment: Add stats to the plot
by
GenoMax
142k
Please use `101010` to format `code` so it is represented in monospace font. I have done this for you now.
Answer: is there a tool to recover corrupted fastq files
by
Tommaso
• 0
You may also want to give a try to **FastqWiper** (https://github.com/mazzalab/fastqwiper)
Comment: Add stats to the plot
by
Ghada
• 0
Thanks. That helpful. I am getting this error data4_test <- data4.ts%>% ungroup() %>% t.test(data =.,value ~ Condition)%>% + …
Comment: scRNA-seq data trained model can be used for predictions on bulk RNA-seq data?
by
ATpoint
82k
I cannot comment here. You are asking why results between two experiments are different. I do not know without seeing the data.
Comment: scRNA-seq data trained model can be used for predictions on bulk RNA-seq data?
by
Bibi
• 0
Thank you so much for this insight. I just want to clarify another point here. I have used scRNA seq data from mice mammary epithelial cell…
Comment: Is it Possible to "Merge" data from Replicates within a VCF SNP File
by
Pierre Lindenbaum
161k
> Cannot read non-existent file: file:///local/home/User/VCF_Filtering/biostar.code your file doesn't exist, is at the wrong place etc.
Comment: Is it Possible to "Merge" data from Replicates within a VCF SNP File
by
ajbarrett98
• 0
Hi Pierre, I am attempting to run this code and am running into this error: (jvar) $ jvarkit vcffilterjdk -f biostar.code Dart_VCF2_Or…
Comment: scRNA-seq data trained model can be used for predictions on bulk RNA-seq data?
by
ATpoint
82k
I cannot give a precise answer, as ML is not my field, but generally, why don't you apply the method to pseudobulks of the exact single-cel…
Answer: geom_bar issue in ggplot2 with xlim()
by
ATpoint
82k
https://stackoverflow.com/questions/10365167/geom-bar-bars-not-displaying-when-specifying-ylim
Comment: What marks a De-Novo Genome assembly as FAILED?
by
Umer
▴ 50
Yes. We are sequencing 45 different samples with illumina. 12 of these are also going to be sequenced with Nanopore (for hybrid assembly). …
Comment: HGVS Nomenclature of Multiple Indels found in Cis
by
LauferVA
4.2k
how has this code progressed? is it publically available? would you want to work together?
Comment: Design for complex RNA-Seq experiment using Deseq2
by
Ezequiel
• 0
I completely agree with most points. The PCA shows that the biggest driver of difference is the patients themselves, with PRE and POST time…
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