Limit : this month
all time today this week this month this year
312 results • Page 1 of 7
Sort: Views
Rank Views Votes Replies
3
votes
8
replies
6.6k
views
7 follow
GATK genomicsDBimport intervals for WGS
gatk genomicsdbimport
updated 17 days ago by • 0 • written 5.1 years ago by 11k
0
votes
5
replies
6.0k
views
Calculate Radius of Gyration [python 3]
biopython PDB Radius of Gyration python protein
updated 29 days ago by • 0 • written 6.5 years ago by ▴ 30
3
votes
4
replies
4.0k
views
FarmCPU - how to explain the reported 'effect'?
gwas
updated 11 days ago by • 0 • written 5.6 years ago by 8.5k
4
votes
6
replies
3.8k
views
How to interpret DEXseq results in therms of significance
DEXseq RNA-Seq exon
updated 13 days ago by ▴ 30 • written 6.7 years ago by ★ 1.2k
0
votes
4
replies
3.6k
views
SNPEff database building error
SNP
updated 6 days ago by • 0 • written 7.1 years ago by • 0
1
vote
6
replies
2.8k
views
Segmentation fault using gemma
gemma gwas
updated 20 days ago by • 0 • written 5.0 years ago by ▴ 90
2
votes
2
replies
2.6k
views
Pindel Segmentation Fault Error
pindel
updated 15 days ago by • 0 • written 10.3 years ago by ▴ 20
0
votes
9
replies
2.6k
views
6 follow
Cannot process all the reads in a fast5 file?
metagenome base-calling fastq nanopore
updated 20 days ago by 43k • written 9 months ago by • 0
1
vote
3
replies
2.5k
views
Problem to remove subset of patients with plink
plink PED
updated 27 days ago by 10k • written 6.2 years ago by ▴ 10
1
vote
14
replies
2.5k
views
Extract gRNA sequence using cutadapt
cutadapt trimming crispr sequencing
updated 17 days ago by 142k • written 4.5 years ago by ▴ 20
4
votes
9
replies
2.1k
views
Legend and hap files for imputation with 38 build
reference 38build impute imputation
20 days ago by anna ▴ 20
2
votes
2
replies
1.8k
views
Parametric or non-parametric tests for qPCR significance testing between treatments?
qPCR statistical test parametric non-parametric
updated 16 days ago by ▴ 210 • written 3.9 years ago by ▴ 40
0
votes
9
replies
1.5k
views
kinannote software installation problems
kinannote
updated 11 days ago by • 0 • written 5.8 years ago by ▴ 30
2
votes
9
replies
1.1k
views
HGVS Nomenclature of Multiple Indels found in Cis
Nomenclature HGVS
12 hours ago by LauferVA 4.2k
2
votes
5
replies
958
views
Retrieval of Active site information programmatically
Catalytic Python Active PDB site Site
updated 20 days ago by ★ 2.0k • written 2.1 years ago by • 0
2
votes
9
replies
946
views
TCGA2STAT Error: Firehose connection
FIREHOSE TCGA
updated 26 days ago by 4.2k • written 7 months ago by • 0
2
votes
5
replies
798
views
what's the genomic location and name of gene responsible for orange and black patches in calico cats
genomes
updated 29 days ago by ▴ 770 • written 4 weeks ago by ★ 2.4k
1
vote
16
replies
749
views
Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NULL > pointer.
blast ncbi
updated 1 day ago by 142k • written 4 days ago by • 0
0
votes
11
replies
724
views
How do I use the STARSolo aligner with MGI DNBelab C series HT scRNAseq libraries?
STARSolo scRNA-seq STAR snRNA-seq MGI
24 days ago by atowns21 • 0
0
votes
1
reply
706
views
after selecting specific GO terms to plot, cneplot is not showing any color for genes, GO terms and only showing lines without nodes.
cneplot
updated 18 days ago by 43k • written 19 days ago by • 0
0
votes
10
replies
645
views
Low mapping rate with Salmon
RNA-seq Salmon Quantification
updated 19 days ago by 19k • written 27 days ago by • 0
3
votes
8
replies
637
views
How to access TCGA samples that were treated with a specific drug?
TCGA RNA-seq
13 days ago by Qroid ▴ 40
0
votes
1
reply
613
views
Basic stats in hierfstat
Fst stats hierfstat
updated 18 days ago by • 0 • written 19 months ago by • 0
0
votes
0
replies
612
views
Differential accessibility using DiffBinf
diffbind
20 days ago by Shloka • 0
0
votes
9
replies
607
views
Using VEP annotation output as the input for a second VEP annotation
Annotation VEP VCF
4 days ago by Arton ▴ 10
0
votes
0
replies
587
views
Correlation between cell type prediction scores and individual gene expression in spatial transcriptomic datasets
single-cell Spatial-Transcriptomics
23 days ago by biocellbio • 0
1
vote
7
replies
580
views
Question regarding WGCNA
WGCNA Network-construction
10 days ago by deepak • 0
0
votes
1
reply
564
views
HOMER on AWS
HOMER
updated 16 days ago by • 0 • written 2.3 years ago by ★ 1.4k
3
votes
3
replies
561
views
Free/open source 23andme-like analysis
SNPs genomics NGS VCF
updated 29 days ago by 14k • written 4 weeks ago by ▴ 580
1
vote
0
replies
561
views
The majority of the sequences in Trinity ID do not start from start codons. Can the sequences still be used for primer design and validation?
Primers TRINITY
29 days ago by mathavanbioinfo ▴ 90
1
vote
8
replies
560
views
Downsampling fastq file
downsample fastq
19 days ago by marco.barr ▴ 130
2
votes
5
replies
547
views
Marking duplicates using UMIs
Deduplication UMI
updated 27 days ago by 19k • written 29 days ago by • 0
0
votes
1
reply
538
views
GAPIT p-value significance threshold
GAPIT p-value GWAS
updated 24 days ago by • 0 • written 5 months ago by • 0
5
votes
7
replies
518
views
RNA seq analysis
DESeq RNA-seq
4 days ago by Jacek ▴ 20
1
vote
4
replies
508
views
cellranger error message
multiplexing cellranger
updated 9 days ago by • 0 • written 3 months ago by ▴ 10
0
votes
6
replies
504
views
Use of Kraken output for functional analysis
metagenomics kraken shotgun
updated 25 days ago by • 0 • written 6 weeks ago by ▴ 20
0
votes
6
replies
494
views
Differential Expression Analysis using DESeq2 in R
deseq2 R
updated 16 days ago by 14k • written 16 days ago by • 0
0
votes
8
replies
475
views
Error in cnetplot enrichplot package
R
updated 27 days ago by 43k • written 27 days ago by • 0
0
votes
5
replies
469
views
different FeatureCounts output for the same data
fpkm Counts Rsubread rna-seq
updated 22 days ago by 100k • written 25 days ago by ▴ 10
1
vote
1
reply
460
views
Difference when using difference number of pathways score to compare between 3 groups
GSVA Limma
updated 29 days ago by ★ 7.2k • written 4 weeks ago by ▴ 280
1
vote
1
reply
459
views
ComBat_Seq stuck adjusting the data
Batch-Effect RNAseq ComBat-Seq
updated 10 days ago by • 0 • written 5 months ago by ▴ 10
1
vote
3
replies
456
views
PCA plot
DESeq2 PCAplot
updated 21 days ago by 4.2k • written 24 days ago by ▴ 10
0
votes
5
replies
446
views
Is it possible to get a list of representative genomes from a past RefSeq release?
representative ncbi asembly refseq
updated 24 days ago by 142k • written 25 days ago by ▴ 90
1
vote
9
replies
437
views
UMI-Tools knee-method has great influence on the results of white list
single-cell whitelist UMI RNA UMI-Tools
updated 9 days ago by 19k • written 12 days ago by ★ 1.8k
0
votes
5
replies
436
views
Should I remove unlocalized scaffols in reference genome before alignment?
qualimap alignment minimap2 GRCh38 assembly
25 days ago by njornet ▴ 20
0
votes
5
replies
436
views
Telescope issue
Telescope RNA-seq
updated 18 days ago by 142k • written 19 days ago by • 0
0
votes
4
replies
428
views
Highest variable features in single cell data
single-cell
12 days ago by carolofharvest ▴ 40
3
votes
7
replies
422
views
FastQC Quality per tile and per sequence behaving strange after using Cutadapt
fastqc cutadapt illumina tile paired-end
20 days ago by salias • 0
1
vote
4
replies
422
views
Can I readmap short reads to rDNA references?
rDNA assembly
updated 9 days ago by 142k • written 4 weeks ago by • 0
1
vote
6
replies
418
views
Do I need to go back and filter my long-reads?
alignment nanopore filtering QC ONT
updated 16 days ago by 142k • written 4 weeks ago by ▴ 80
312 results • Page 1 of 7
Recent Votes
Sequence alignment on split read event such as inversion, duplication and complex nested events.
ICGEB - SLIBTEC NGS Workshop: Won Best Oral Presentation Award
Comment: Add stats to the plot
Post-doctoral Position in Alzheimer’s Disease Genetics, ‘Omics, and Biomarkers
The Biostar Handbook. A bioinformatics e-book for beginners.
Answer: How to add Ensembl id to cluster.markers in Seurat
How to add Ensembl id to cluster.markers in Seurat
Recent Locations • All
Australia, just now
Perth, Australia, just now
United States, 2 minutes ago
China, 3 minutes ago
United States, 4 minutes ago
Australia, 4 minutes ago
Mexico, 9 minutes ago
Recent Awards • All
Scholar to Pierre Lindenbaum 161k
Voter to Sara ▴ 30
Popular Question to carlopecoraro2 ★ 2.5k
Popular Question to scideas ▴ 30
Popular Question to Muhammad • 0
Popular Question to synat.keam ▴ 100
Scholar to jv ★ 1.8k
Recent Replies
Comment: BiomartException: Query ERROR for existing dataset in BioMart by Luqman • 0
I am using *pybiomart* which has Server inplace of BiomartServer, I used that as per above but still getting the same error. Also, when I a…
Comment: Blastn, need help to increase speed by m13113153781 • 0
mmseq2 is indeed a good acceleration solution, but its index files require ~ 6 T space....
Answer: seqtk subseq in.fastq list.txt > out.fastq not extracting full sequence from by KHURRAM SHAHZAD • 0
Thank you it works
Answer: Add stats to the plot by Ghada • 0
I think this is what caused the error. we do not have group 1 and 2 in the statistical test results???? ![enter image description here][…
Answer: scRNA-seq data trained model can be used for predictions on bulk RNA-seq data? by Bibi • 0
@atpoint thanks you for your timely response. Can someone else shed light if we can compare the trend of DEGs using the scRNA and Bulk RNA…
Comment: Add stats to the plot by GenoMax 142k
Please use `101010` to format `code` so it is represented in monospace font. I have done this for you now.
Answer: is there a tool to recover corrupted fastq files by Tommaso • 0
You may also want to give a try to **FastqWiper** (https://github.com/mazzalab/fastqwiper)
Comment: Add stats to the plot by Ghada • 0
Thanks. That helpful. I am getting this error data4_test <- data4.ts%>% ungroup() %>% t.test(data =.,value ~ Condition)%>% + …
Comment: scRNA-seq data trained model can be used for predictions on bulk RNA-seq data? by ATpoint 82k
I cannot comment here. You are asking why results between two experiments are different. I do not know without seeing the data.
Comment: scRNA-seq data trained model can be used for predictions on bulk RNA-seq data? by Bibi • 0
Thank you so much for this insight. I just want to clarify another point here. I have used scRNA seq data from mice mammary epithelial cell…
Comment: Is it Possible to "Merge" data from Replicates within a VCF SNP File by Pierre Lindenbaum 161k
> Cannot read non-existent file: file:///local/home/User/VCF_Filtering/biostar.code your file doesn't exist, is at the wrong place etc.
Comment: Is it Possible to "Merge" data from Replicates within a VCF SNP File by ajbarrett98 • 0
Hi Pierre, I am attempting to run this code and am running into this error: (jvar) $ jvarkit vcffilterjdk -f biostar.code Dart_VCF2_Or…
Comment: scRNA-seq data trained model can be used for predictions on bulk RNA-seq data? by ATpoint 82k
I cannot give a precise answer, as ML is not my field, but generally, why don't you apply the method to pseudobulks of the exact single-cel…
Answer: geom_bar issue in ggplot2 with xlim() by ATpoint 82k
https://stackoverflow.com/questions/10365167/geom-bar-bars-not-displaying-when-specifying-ylim
Comment: What marks a De-Novo Genome assembly as FAILED? by Umer ▴ 50
Yes. We are sequencing 45 different samples with illumina. 12 of these are also going to be sequenced with Nanopore (for hybrid assembly). …
Traffic: 1716 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6