5
votes
7
replies
506
views
5
votes
5
replies
345
views
4
votes
9
replies
2.1k
views
20 days ago by
anna
▴
20
4
votes
6
replies
3.8k
views
3
votes
3
replies
295
views
3
votes
3
replies
558
views
3
votes
7
replies
422
views
3
votes
5
replies
352
views
3
votes
8
replies
6.6k
views
7 follow
updated 17 days ago by
Sd
•
0
•
written 5.1 years ago by
Nicolas Rosewick
11k
3
votes
8
replies
637
views
3
votes
4
replies
4.0k
views
updated 11 days ago by
chloek88
•
0
•
written 5.6 years ago by
Philipp Bayer
8.5k
3
votes
1
reply
209
views
3
votes
4
replies
332
views
3
votes
2
replies
201
views
updated 6 days ago by
ATpoint
82k
•
written 6 days ago by
jennyp0706
•
0
2
votes
5
replies
547
views
2
votes
5
replies
796
views
2
votes
2
replies
255
views
updated 16 days ago by
GenoMax
142k
•
written 16 days ago by
ahmad.sajad4541
•
0
2
votes
3
replies
334
views
2
votes
9
replies
945
views
2
votes
2
replies
262
views
updated 3 days ago by
Ram
43k
•
written 3 days ago by
txema.heredia
▴
130
2
votes
4
replies
387
views
2
votes
2
replies
247
views
2
votes
2
replies
339
views
updated 25 days ago by
Ram
43k
•
written 26 days ago by
v.berriosfarias
▴
140
2
votes
5
replies
958
views
2
votes
9
replies
1.1k
views
8 hours ago by
LauferVA
4.2k
2
votes
2
replies
2.6k
views
2
votes
3
replies
354
views
2
votes
2
replies
1.8k
views
updated 16 days ago by
e.r.zakiev
▴
210
•
written 3.9 years ago by
n.anuragsharma
▴
40
1
vote
4
replies
507
views
1
vote
3
replies
384
views
1
vote
0
replies
197
views
1
vote
6
replies
418
views
1
vote
3
replies
2.5k
views
updated 27 days ago by
chrchang523
10k
•
written 6.2 years ago by
Ginevra
▴
10
1
vote
4
replies
324
views
1
vote
2
replies
208
views
1
vote
2
replies
258
views
1
vote
3
replies
332
views
1
vote
9
replies
436
views
updated 9 days ago by
i.sudbery
19k
•
written 12 days ago by
Assa Yeroslaviz
★
1.8k
1
vote
8
replies
559
views
19 days ago by
marco.barr
▴
130
1
vote
1
reply
200
views
updated 2 days ago by
Nyksubuz
▴
20
•
written 3 days ago by
mirwa.zidi93
•
0
1
vote
1
reply
163
views
1
vote
1
reply
257
views
updated 19 days ago by
Ram
43k
•
written 19 days ago by
Jonathan Yoou
▴
60
1
vote
3
replies
279
views
1
vote
2
replies
288
views
1
vote
1
reply
187
views
1
vote
0
replies
99
views
1
vote
0
replies
561
views
1
vote
1
reply
271
views
updated 24 days ago by
ATpoint
82k
•
written 24 days ago by
AaronJaime
•
0
1
vote
2
replies
283
views
updated 27 days ago by
Gordon Smyth
★
7.2k
•
written 5 weeks ago by
Netanel
•
0
1
vote
1
reply
459
views
Recent Votes
Recent Locations •
All
United States, just now
United States, 1 minute ago
Mexico, 2 minutes ago
United States, 8 minutes ago
United States, 12 minutes ago
France/Nantes/Institut du Thorax - INSERM UMR1087, 13 minutes ago
United States, 14 minutes ago
Recent Awards •
All
Scholar to
Pierre Lindenbaum
161k
Popular Question to
carlopecoraro2
★
2.5k
Popular Question to
scideas
▴
30
Popular Question to
Muhammad
•
0
Popular Question to
synat.keam
▴
100
Recent Replies
Answer: Add stats to the plot
by
Ghada
•
0
I think this is what caused the error. we do not have group 1 and 2 in the statistical test results????
![enter image description here][…
Answer: scRNA-seq data trained model can be used for predictions on bulk RNA-seq data?
by
Bibi
•
0
@atpoint thanks you for your timely response. Can someone else shed light if we can compare the trend of DEGs using the scRNA and Bulk RNA…
Comment: Add stats to the plot
by
GenoMax
142k
Please use `101010` to format `code` so it is represented in monospace font. I have done this for you now.
Answer: is there a tool to recover corrupted fastq files
by
Tommaso
•
0
You may also want to give a try to **FastqWiper** (https://github.com/mazzalab/fastqwiper)
Comment: Add stats to the plot
by
Ghada
•
0
Thanks. That helpful.
I am getting this error
data4_test <- data4.ts%>% ungroup() %>% t.test(data =.,value ~ Condition)%>%
+ …
Comment: scRNA-seq data trained model can be used for predictions on bulk RNA-seq data?
by
ATpoint
82k
I cannot comment here. You are asking why results between two experiments are different. I do not know without seeing the data.
Comment: scRNA-seq data trained model can be used for predictions on bulk RNA-seq data?
by
Bibi
•
0
Thank you so much for this insight. I just want to clarify another point here. I have used scRNA seq data from mice mammary epithelial cell…
Comment: Is it Possible to "Merge" data from Replicates within a VCF SNP File
by
Pierre Lindenbaum
161k
> Cannot read non-existent file: file:///local/home/User/VCF_Filtering/biostar.code
your file doesn't exist, is at the wrong place etc.
Comment: Is it Possible to "Merge" data from Replicates within a VCF SNP File
by
ajbarrett98
•
0
Hi Pierre,
I am attempting to run this code and am running into this error:
(jvar) $ jvarkit vcffilterjdk -f biostar.code Dart_VCF2_Or…
Comment: scRNA-seq data trained model can be used for predictions on bulk RNA-seq data?
by
ATpoint
82k
I cannot give a precise answer, as ML is not my field, but generally, why don't you apply the method to pseudobulks of the exact single-cel…
Answer: geom_bar issue in ggplot2 with xlim()
by
ATpoint
82k
https://stackoverflow.com/questions/10365167/geom-bar-bars-not-displaying-when-specifying-ylim
Comment: What marks a De-Novo Genome assembly as FAILED?
by
Umer
▴
50
Yes. We are sequencing 45 different samples with illumina.
12 of these are also going to be sequenced with Nanopore (for hybrid assembly). …
Comment: HGVS Nomenclature of Multiple Indels found in Cis
by
LauferVA
4.2k
how has this code progressed? is it publically available? would you want to work together?
Comment: Design for complex RNA-Seq experiment using Deseq2
by
Ezequiel
•
0
I completely agree with most points. The PCA shows that the biggest driver of difference is the patients themselves, with PRE and POST time…
Comment: Add stats to the plot
by
marco.barr
▴
130
Hi, you can add statistical annotations using `ggpubr` function `stat_pvalue_manual `. You need to make sure you calculate the p-values fir…
Traffic: 1166 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6