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3
votes
2
replies
2.4k
views
From cuffmerge to cuffdiff: What input for cuffdiff?
rna-seq
cuffmerge
cuffdiff
treated
controls
updated 3.6 years ago by
Biostar
20 • written 7.9 years ago by
BioinfGuru
★ 1.7k
3
votes
7
replies
2.3k
views
Tissue Specificity R-package
tissue specificity
R package
pipeline
publication
updated 4.8 years ago by
Biostar
20 • written 6.2 years ago by
BioinfGuru
★ 1.7k
0
votes
0
replies
19k
views
Answer:
A: Checking fastq is valid
updated 5.0 years ago by
Ram
43k • written 7.4 years ago by
BioinfGuru
★ 1.7k
0
votes
0
replies
5.7k
views
Comment:
C: Quantile normalisation: raw rpkm or log2rpkm?
updated 5.3 years ago by
Ram
43k • written 7.6 years ago by
BioinfGuru
★ 1.7k
0
votes
1
reply
1.4k
views
Comment:
C: Can i use ucsc track browser without a reference organism?
5.7 years ago by
BioinfGuru
★ 1.7k
1
vote
1
reply
1.4k
views
Comment:
C: Can i use ucsc track browser without a reference organism?
5.7 years ago by
BioinfGuru
★ 1.7k
0
votes
0
replies
7.0k
views
Comment:
C: mitochondrial blacklists ATAC-Seq
updated 5.7 years ago by
Ram
43k • written 7.2 years ago by
BioinfGuru
★ 1.7k
1
vote
1
reply
7.0k
views
Answer:
A: mitochondrial blacklists ATAC-Seq
updated 5.7 years ago by
Ram
43k • written 7.2 years ago by
BioinfGuru
★ 1.7k
1
vote
1
reply
4.8k
views
Comment:
C: Confused about merging RNA-seq lanes/runs
5.9 years ago by
BioinfGuru
★ 1.7k
8
votes
3
replies
4.8k
views
Confused about merging RNA-seq lanes/runs
Merge
RNA-seq
samples
runs
lanes
updated 5.9 years ago by
GenoMax
142k • written 5.9 years ago by
BioinfGuru
★ 1.7k
1
vote
2
replies
4.8k
views
Comment:
C: Can we concatenate two fastq files from same sample but different runs
5.9 years ago by
BioinfGuru
★ 1.7k
0
votes
0
replies
6.7k
views
Answer:
C: Picard MarkDuplicates flag vs remove issue
5.9 years ago by
BioinfGuru
★ 1.7k
0
votes
1
reply
6.7k
views
Comment:
C: Picard MarkDuplicates flag vs remove issue
5.9 years ago by
BioinfGuru
★ 1.7k
1
vote
0
replies
1.9k
views
Comment:
C: Is the sequence quality good enough?
5.9 years ago by
BioinfGuru
★ 1.7k
9
votes
7
replies
1.9k
views
Is the sequence quality good enough?
WGS
HISEQ4000
QC
5.9 years ago by
BioinfGuru
★ 1.7k
0
votes
0
replies
1.9k
views
Comment:
C: Is the sequence quality good enough?
5.9 years ago by
BioinfGuru
★ 1.7k
0
votes
0
replies
1.9k
views
Comment:
C: Is the sequence quality good enough?
5.9 years ago by
BioinfGuru
★ 1.7k
1
vote
0
replies
2.2k
views
Comment:
C: Low mapping percentage after mapping RNA-seq reads to a closely related species
5.9 years ago by
BioinfGuru
★ 1.7k
0
votes
0
replies
1.6k
views
Variant analysis on 1 or 2 samples: are the final steps of the GATK pipeline unneccessary?
SNP
GATK
pipeline
variant analysis
6.0 years ago by
BioinfGuru
★ 1.7k
0
votes
0
replies
2.5k
views
Comment:
C: HaplotypeCaller output - All records are non-variant - Have I gone wrong somwher
6.0 years ago by
BioinfGuru
★ 1.7k
2
votes
2
replies
2.5k
views
HaplotypeCaller output - All records are non-variant - Have I gone wrong somewhere?
SNP
haplotypecaller
NON_REF
gatk
6.0 years ago by
BioinfGuru
★ 1.7k
2
votes
1
reply
12k
views
Comment:
C: How to select an aligner?
6.0 years ago by
BioinfGuru
★ 1.7k
4
votes
1
reply
12k
views
Answer:
A: How to select an aligner?
6.0 years ago by
BioinfGuru
★ 1.7k
0
votes
1
reply
3.1k
views
Comment:
C: Parsing Blast output on linux/unix
6.0 years ago by
BioinfGuru
★ 1.7k
0
votes
0
replies
2.8k
views
Comment:
C: GATK SNPs calling multiple sample without any known SNPs database
6.0 years ago by
BioinfGuru
★ 1.7k
0
votes
1
reply
2.8k
views
Answer:
A: GATK SNPs calling multiple sample without any known SNPs database
6.0 years ago by
BioinfGuru
★ 1.7k
0
votes
0
replies
1.5k
views
Answer:
A: Are there needs to perform imputation for genotype generated from WGS ?
6.0 years ago by
BioinfGuru
★ 1.7k
1
vote
0
replies
1.4k
views
Answer:
A: Protein Prediction Software - Any Recommendations? (template based vs non-templa
6.0 years ago by
BioinfGuru
★ 1.7k
1
vote
0
replies
2.8k
views
Answer:
A: removing batch effects from large number of data sets
6.0 years ago by
BioinfGuru
★ 1.7k
2
votes
1
reply
2.0k
views
Comment:
C: location of mutations
6.0 years ago by
BioinfGuru
★ 1.7k
1
vote
1
reply
2.0k
views
Answer:
A: location of mutations
6.0 years ago by
BioinfGuru
★ 1.7k
0
votes
1
reply
9.8k
views
Comment:
C: STAR output - high multi-mapping, low alignment (human)
6.0 years ago by
BioinfGuru
★ 1.7k
3
votes
1
reply
9.8k
views
Answer:
A: STAR output - high multi-mapping, low alignment (human)
6.0 years ago by
BioinfGuru
★ 1.7k
1
vote
0
replies
2.0k
views
Answer:
A: How to assess extent of cell-type admixtures from bulk RNA-seq data for a single
6.0 years ago by
BioinfGuru
★ 1.7k
1
vote
2
replies
5.6k
views
Answer:
A: How to run bcftools roh with multiple samples vcf
6.0 years ago by
BioinfGuru
★ 1.7k
0
votes
2
replies
6.4k
views
Answer:
A: MACS2 output (fold enrichment)
6.0 years ago by
BioinfGuru
★ 1.7k
0
votes
3
replies
1.0k
views
Answer:
C: perl script 'blast_rod_finder.pl' not giving output but no errors either
6.0 years ago by
BioinfGuru
★ 1.7k
0
votes
1
reply
4.4k
views
Comment:
A: Can someone please help me run any GATK4 pipeline?
6.0 years ago by
BioinfGuru
★ 1.7k
3
votes
1
reply
11k
views
Answer:
A: LEADING and TRAILING in TRIMMOMATIC
6.0 years ago by
BioinfGuru
★ 1.7k
1
vote
1
reply
8.6k
views
Answer:
A: GATK HaolotypeCaller takes too much time for variant calling
6.0 years ago by
BioinfGuru
★ 1.7k
4
votes
12
replies
2.3k
views
Variant calling on single sample Macaque WGS data - advice please
Variant calling
mutect2
haplotypecaller
PON
6.0 years ago by
BioinfGuru
★ 1.7k
0
votes
0
replies
2.3k
views
Comment:
C: Variant calling on single sample Macaque WGS data - advice please
6.0 years ago by
BioinfGuru
★ 1.7k
0
votes
0
replies
2.3k
views
Comment:
C: Variant calling on single sample Macaque WGS data - advice please
6.0 years ago by
BioinfGuru
★ 1.7k
0
votes
2
replies
2.3k
views
Comment:
C: Variant calling on single sample Macaque WGS data - advice please
6.0 years ago by
BioinfGuru
★ 1.7k
0
votes
1
reply
2.3k
views
Comment:
C: Variant calling on single sample Macaque WGS data - advice please
6.0 years ago by
BioinfGuru
★ 1.7k
0
votes
1
reply
3.9k
views
Comment:
C: Extracting upstream and Downstream of a Gene based on different intervals
6.0 years ago by
BioinfGuru
★ 1.7k
0
votes
1
reply
2.3k
views
Comment:
C: Why does inclusion of decoy sequences cause more BWA alignments to an autosome?
6.0 years ago by
BioinfGuru
★ 1.7k
0
votes
0
replies
3.2k
views
Answer:
A: How to edit count matrix of a DESeq object?
6.0 years ago by
BioinfGuru
★ 1.7k
0
votes
0
replies
5.4k
views
Comment:
C: Swiss-Model vs. Modeller
6.0 years ago by
BioinfGuru
★ 1.7k
2
votes
1
reply
1.6k
views
Answer:
A: A dataset containing small RNA-seq experiments over different tissues of human.
6.0 years ago by
BioinfGuru
★ 1.7k
415 results • Page
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