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124
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Comment: Comment: Filter Genome for Specific Sites
4 hours ago by Pierre Lindenbaum 161k
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144
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Answer: Answer: GATK Structural Variants Pipeline - Steps
10 hours ago by Pierre Lindenbaum 161k
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1
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192
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Comment: Comment: Why most genes have high padj values
14 hours ago by Pierre Lindenbaum 161k
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140
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Comment: Comment: How to find identical sequences in genome fasta file (by Python or any possible
15 hours ago by Pierre Lindenbaum 161k
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526
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Comment: Comment: Is it Possible to "Merge" data from Replicates within a VCF SNP File
1 day ago by Pierre Lindenbaum 161k
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251
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Comment: Comment: How to generate table_annovar from VCF input?
3 days ago by Pierre Lindenbaum 161k
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283
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Comment: Comment: Sam file Header problem
3 days ago by Pierre Lindenbaum 161k
2
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252
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Comment: Comment: getting exon coordinates
updated 4 days ago by 142k • written 4 days ago by 161k
0
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416
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Comment: Comment: finding evidence(s) of a peptide translated from an "Upstream Open Reading Frame
4 days ago by Pierre Lindenbaum 161k
3
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4
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416
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finding evidence(s) of a peptide translated from an "Upstream Open Reading Frame (uORF)"
UTR masspec uORF peptide
updated 4 days ago by 142k • written 4 days ago by 161k
0
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283
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Comment: Comment: Sam file Header problem
4 days ago by Pierre Lindenbaum 161k
0
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1
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758
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Comment: Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU
4 days ago by Pierre Lindenbaum 161k
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1
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301
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Comment: Comment: Filtering VCF files based on VAF giving incorrect results
5 days ago by Pierre Lindenbaum 161k
0
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1
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758
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Comment: Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU
5 days ago by Pierre Lindenbaum 161k
1
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1
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211
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Answer: Answer: Genotyping sites with N in reference genome
5 days ago by Pierre Lindenbaum 161k
0
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1
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248
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Comment: Comment: Sequencing Depth (Read Depth) Calculations
5 days ago by Pierre Lindenbaum 161k
0
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194
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Comment: Comment: Cannot install bwa-mem2 via conda
updated 4 days ago by 43k • written 5 days ago by 161k
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231
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Comment: Comment: Circos Plot to Visualize Chromatin Accessibility Changes from ATAC-seq Data
5 days ago by Pierre Lindenbaum 161k
1
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0
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231
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Comment: Comment: Circos Plot to Visualize Chromatin Accessibility Changes from ATAC-seq Data
5 days ago by Pierre Lindenbaum 161k
0
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1
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231
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Comment: Comment: Circos Plot to Visualize Chromatin Accessibility Changes from ATAC-seq Data
5 days ago by Pierre Lindenbaum 161k
0
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0
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275
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Comment: Comment: Annotating file using bcftools
5 days ago by Pierre Lindenbaum 161k
1
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2
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275
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Answer: Answer: Annotating file using bcftools
5 days ago by Pierre Lindenbaum 161k
0
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760
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Comment: Comment: Filtering Multi-sample VCF file for all except one Genotype
5 days ago by Pierre Lindenbaum 161k
1
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1
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301
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Answer: Answer: Filtering VCF files based on VAF giving incorrect results
5 days ago by Pierre Lindenbaum 161k
0
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1
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193
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Comment: Comment: Is it necessary to do genotype quality filteration after snp calling with GATK
6 days ago by Pierre Lindenbaum 161k
3
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0
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197
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Answer: Answer: Duplicated sequence samtools
7 days ago by Pierre Lindenbaum 161k
0
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1
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526
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Comment: Comment: Is it Possible to "Merge" data from Replicates within a VCF SNP File
8 days ago by Pierre Lindenbaum 161k
0
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0
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401
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Comment: Comment: joint callset and vcf sorting, unknown TAG issue
8 days ago by Pierre Lindenbaum 161k
0
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1
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401
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Comment: Comment: joint callset and vcf sorting, unknown TAG issue
8 days ago by Pierre Lindenbaum 161k
2
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1
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401
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Answer: Answer: joint callset and vcf sorting, unknown TAG issue
8 days ago by Pierre Lindenbaum 161k
0
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1
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401
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Comment: Comment: joint callset and vcf sorting, unknown TAG issue
8 days ago by Pierre Lindenbaum 161k
0
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1
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526
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Comment: Comment: Is it Possible to "Merge" data from Replicates within a VCF SNP File
9 days ago by Pierre Lindenbaum 161k
0
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1
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236
views
Comment: Comment: java.nio.bufferunderflowexception haplotypecaller error for bqsr reads
9 days ago by Pierre Lindenbaum 161k
2
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0
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237
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Answer: Answer: Failed to open VCF file
9 days ago by Pierre Lindenbaum 161k
0
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2
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526
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Answer: Answer: Is it Possible to "Merge" data from Replicates within a VCF SNP File
8 days ago by Pierre Lindenbaum 161k
1
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0
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290
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Comment: Comment: what is another word for a BLAST "hit"?
10 days ago by Pierre Lindenbaum 161k
0
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1
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574
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Comment: Comment: In IGV is this a heterogeneous mutation or false call?
10 days ago by Pierre Lindenbaum 161k
0
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2
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574
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Comment: Comment: In IGV is this a heterogeneous mutation or false call?
10 days ago by Pierre Lindenbaum 161k
0
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1
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574
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Answer: Answer: In IGV is this a heterogeneous mutation or false call?
10 days ago by Pierre Lindenbaum 161k
0
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0
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311
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Comment: Comment: How to format "I" and "D" in vcf version 4.2 for liftover analysis in GATK
10 days ago by Pierre Lindenbaum 161k
0
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1
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311
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Comment: Comment: How to format "I" and "D" in vcf version 4.2 for liftover analysis in GATK
10 days ago by Pierre Lindenbaum 161k
1
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1
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760
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Answer: Answer: Filtering Multi-sample VCF file for all except one Genotype
10 days ago by Pierre Lindenbaum 161k
0
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1
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497
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Comment: Comment: Different output for read length
11 days ago by Pierre Lindenbaum 161k
0
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2
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497
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Answer: Answer: Different output for read length
11 days ago by Pierre Lindenbaum 161k
0
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0
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329
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Comment: Comment: bcftools - reducing to "sites-only"?
11 days ago by Pierre Lindenbaum 161k
0
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1
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362
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Comment: Comment: How to convert normalized BigWig file to count matrix?
11 days ago by Pierre Lindenbaum 161k
1
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0
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3.0k
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Comment: Comment: How to solve the error 'ERROR::MATE_NOT_FOUND:Found xxx unpaired mates' when ru
11 days ago by Pierre Lindenbaum 161k
0
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0
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253
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Comment: Comment: Nextflow: how to get the process work dir, within the process
11 days ago by Pierre Lindenbaum 161k
3
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1
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3.0k
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Answer: Answer: How to solve the error 'ERROR::MATE_NOT_FOUND:Found xxx unpaired mates' when ru
11 days ago by Pierre Lindenbaum 161k
2
votes
1
reply
253
views
Answer: Answer: Nextflow: how to get the process work dir, within the process
11 days ago by Pierre Lindenbaum 161k
12,476 results • Page 1 of 250
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