Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
Showing : answers
1
vote
0
replies
320
views
Answer: Answer: BioGRID REST - How to retrieve all the protein interactions?
7 weeks ago by Pierre Lindenbaum 161k
4
votes
0
replies
1.2k
views
Answer: Answer: F*up Night style events for Bioinformatics ? Comment if you're interested!
7 weeks ago by Pierre Lindenbaum 161k
1
vote
0
replies
374
views
Answer: Answer: diffbind : killed dba.count(DBsample, bParallel=FALSE)
7 weeks ago by Pierre Lindenbaum 161k
0
votes
1
reply
414
views
Answer: Answer: calculate mismatch rate from VCF file
7 weeks ago by Pierre Lindenbaum 161k
0
votes
1
reply
329
views
Answer: Answer: Confirm if a genome position falls into a coding exon
8 weeks ago by Pierre Lindenbaum 161k
1
vote
1
reply
449
views
Answer: Answer: 0-based coordinates from samtools depth
8 weeks ago by Pierre Lindenbaum 161k
3
votes
2
replies
745
views
Answer: Answer: Variant calling of GBS data
8 weeks ago by Pierre Lindenbaum 161k
0
votes
0
replies
752
views
Answer: Answer: How to filter Illumina Nirvana variant annotation?
8 weeks ago by Pierre Lindenbaum 161k
1
vote
0
replies
420
views
Answer: Answer: What is meant by 'genomic order' in gatk's GatherVcfs, and how do I check for it
8 weeks ago by Pierre Lindenbaum 161k
0
votes
1
reply
568
views
Answer: Answer: I have a bed file containing genomic locations and A or B compartment annotation
8 weeks ago by Pierre Lindenbaum 161k
2
votes
1
reply
297
views
Answer: Answer: Annotating indels and SNVs
8 weeks ago by Pierre Lindenbaum 161k
0
votes
1
reply
404
views
Answer: Answer: HISAT2 installation issue
8 weeks ago by Pierre Lindenbaum 161k
1
vote
1
reply
459
views
Answer: Answer: bcftools select sites with multiple combinatio ns of FILTER column
8 weeks ago by Pierre Lindenbaum 161k
0
votes
0
replies
660
views
Answer: Answer: Fine-tuning NCBI taxid / taxidlist
8 weeks ago by Pierre Lindenbaum 161k
2
votes
1
reply
347
views
Answer: Answer: Annotate genes from gtf file to vcf file
8 weeks ago by Pierre Lindenbaum 161k
2
votes
1
reply
566
views
Answer: Answer: bedToBigBed error, what am I doing wrong?
8 weeks ago by Pierre Lindenbaum 161k
0
votes
1
reply
453
views
Answer: Answer: Biostrings extract read
8 weeks ago by Pierre Lindenbaum 161k
1
vote
1
reply
465
views
Answer: Answer: How to add FORMAT/TAG = "." to all samples in a vcf file via bcftools?
8 weeks ago by Pierre Lindenbaum 161k
0
votes
1
reply
358
views
Answer: Answer: error in wigToBigWig while converting mappability to bedgraph
8 weeks ago by Pierre Lindenbaum 161k
3
votes
0
replies
269
views
Answer: Answer: Problem with .bed file
8 weeks ago by Pierre Lindenbaum 161k
1
vote
1
reply
397
views
Answer: Answer: Can't use VarScan2 to call somatic variants from my tumor/sample vcf pair
9 weeks ago by Pierre Lindenbaum 161k
0
votes
0
replies
252
views
Answer: Answer: converting VCF files to TSV file
9 weeks ago by Pierre Lindenbaum 161k
0
votes
1
reply
297
views
Answer: Answer: Bed file filtering
9 weeks ago by Pierre Lindenbaum 161k
1
vote
0
replies
283
views
Answer: Answer: Query Name too long - samtools
10 weeks ago by Pierre Lindenbaum 161k
0
votes
0
replies
281
views
Answer: Answer: Merging 2 VCF files using bcftools, however how should I update the fields accor
10 weeks ago by Pierre Lindenbaum 161k
0
votes
0
replies
585
views
Answer: Answer: i'm trying to use STAR and there is a problem...
10 weeks ago by Pierre Lindenbaum 161k
0
votes
0
replies
700
views
Answer: Answer: Warning: Expected at least 2 parts in FORMAT entry: ID=GP,Number=3,Type=Float,De
10 weeks ago by Pierre Lindenbaum 161k
3
votes
1
reply
445
views
Answer: Answer: How to merge VCF files from multiple samples and remove individual level informa
10 weeks ago by Pierre Lindenbaum 161k
0
votes
1
reply
2.5k
views
Answer: Answer: Coovar: Co-Occurring Variant Analyzer
10 weeks ago by Pierre Lindenbaum 161k
0
votes
1
reply
492
views
Answer: Answer: Issues filtering VCF file with bcftools/vcftools
10 weeks ago by Pierre Lindenbaum 161k
2
votes
1
reply
427
views
Answer: Answer: Uploading HiC track on UCSC browser
10 weeks ago by Pierre Lindenbaum 161k
0
votes
0
replies
236
views
Answer: Answer: How does one create a custom VCF file?
10 weeks ago by Pierre Lindenbaum 161k
0
votes
0
replies
427
views
Answer: Answer: blast in python
11 weeks ago by Pierre Lindenbaum 161k
0
votes
0
replies
256
views
Answer: Answer: How to get population specific SNPs from a vcf file
11 weeks ago by Pierre Lindenbaum 161k
0
votes
1
reply
495
views
Answer: Answer: Selection of GTF file from gencode
11 weeks ago by Pierre Lindenbaum 161k
2
votes
1
reply
373
views
Answer: Answer: GnomAD
11 weeks ago by Pierre Lindenbaum 161k
0
votes
1
reply
508
views
Answer: Answer: CollectVariantCallingMetrics Error
11 weeks ago by Pierre Lindenbaum 161k
1
vote
1
reply
408
views
Answer: Answer: how to remove FORMAT field in vcf field
11 weeks ago by Pierre Lindenbaum 161k
1
vote
0
replies
354
views
Answer: Answer: get flanking sequences of a SNP in a vcf
11 weeks ago by Pierre Lindenbaum 161k
1
vote
1
reply
430
views
Answer: Answer: Would a string composed of `#CHROM`, `POS`, `REF` and `ALT` uniquely identify a
12 weeks ago by Pierre Lindenbaum 161k
0
votes
1
reply
546
views
Answer: Answer: Maximum returned records using epost?
12 weeks ago by Pierre Lindenbaum 161k
0
votes
1
reply
629
views
Answer: Answer: Bcftools view error
12 weeks ago by Pierre Lindenbaum 161k
2
votes
0
replies
829
views
Answer: Answer: It's my first time doing alignment and i keep getting this message, is this norm
12 weeks ago by Pierre Lindenbaum 161k
1
vote
0
replies
666
views
Answer: Answer: Separating bam file based on directionality / samtools view -F/-f option(s) appe
3 months ago by Pierre Lindenbaum 161k
0
votes
0
replies
472
views
Answer: Answer: genomecov -d -pc -ibam showing no coverage for every position
3 months ago by Pierre Lindenbaum 161k
5
votes
0
replies
551
views
Answer: Answer: samtools index error - "Unsorted positions on sequence" even though file is sort
3 months ago by Pierre Lindenbaum 161k
2
votes
1
reply
548
views
Answer: Answer: Extract SNPs present in mutants
3 months ago by Pierre Lindenbaum 161k
3
votes
1
reply
375
views
Answer: Answer: How to exclude reads from a fastq file, using a list of read names?
3 months ago by Pierre Lindenbaum 161k
2
votes
1
reply
684
views
Answer: Answer: Split large deletion D in CIGAR string and filtering reads
3 months ago by Pierre Lindenbaum 161k
4
votes
1
reply
376
views
Answer: Answer: line 1: syntax error near unexpected token `Rsubread
3 months ago by Pierre Lindenbaum 161k
4,704 results • Page 2 of 95
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6