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Comment: Which language use as a beginner in Bioinformatics and Computational genomics
5 months ago by
rpolicastro
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422
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Comment:
Comment: sequencing data from different samples in the Integrative Genome Viewer (IGV)
5 months ago by
rpolicastro
13k
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0
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878
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Comment:
Comment: scRNA-seq: Consistent low number of cells and low fraction reads across the samp
5 months ago by
rpolicastro
13k
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984
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Comment:
Comment: Tools or R / Python packages to perfom ML models
5 months ago by
rpolicastro
13k
2
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1
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878
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Comment:
Comment: scRNA-seq: Consistent low number of cells and low fraction reads across the samp
5 months ago by
rpolicastro
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563
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Comment:
Comment: Making multiple box plots with relative abundance in R
5 months ago by
rpolicastro
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563
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Answer:
Answer: Making multiple box plots with relative abundance in R
5 months ago by
rpolicastro
13k
2
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528
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Answer:
Answer: How to create a mutation frequency comparison plot?
5 months ago by
rpolicastro
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2
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0
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505
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Answer:
Answer: How to get unaligned reads and aligned reads into separate files from SAM/BAM?
5 months ago by
rpolicastro
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1.1k
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Comment:
Comment: Using ggplot2 to make barplots of RNASeq data - maintaining sample metadata when
5 months ago by
rpolicastro
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587
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Comment: Extracting list of identical items from several excel files
5 months ago by
rpolicastro
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1.3k
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Comment:
Comment: WGCNA Analysis - blockwiseModules data processing
6 months ago by
rpolicastro
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638
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Answer:
Answer: featureCount Error "No paired-end reads were detected in paired-end read library
6 months ago by
rpolicastro
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513
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Comment:
Comment: How to change "CompressedGRangesList" to "GRangesList"
6 months ago by
rpolicastro
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498
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Comment:
Comment: ComBat-seq problem
6 months ago by
rpolicastro
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0
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504
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Comment:
Comment: STAR GeneCounts for most genes are 0
6 months ago by
rpolicastro
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541
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Comment:
Comment: featureCounts error???
6 months ago by
rpolicastro
13k
2
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1
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825
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Answer:
Answer: Samtools index not working in Snakemake
6 months ago by
rpolicastro
13k
1
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1
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918
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Comment:
Comment: duplicates issues when trying to convert long to wide in R
6 months ago by
rpolicastro
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918
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Comment:
Comment: duplicates issues when trying to convert long to wide in R
6 months ago by
rpolicastro
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0
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0
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424
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Comment:
Comment: How to make an amino acid sequence using `AAString ()`?
6 months ago by
rpolicastro
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1
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0
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648
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Comment:
Comment: RNA-Seq data analysis - question
6 months ago by
rpolicastro
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3
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1
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810
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Answer:
Answer: running for loop for resolution of seurat got error: Error: Not an S4 object.
6 months ago by
rpolicastro
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0
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0
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565
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Comment:
Comment: Differential Gene Expression between patients and not groups
6 months ago by
rpolicastro
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1
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655
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Comment:
Comment: R package version
6 months ago by
rpolicastro
13k
1
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565
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Comment:
Comment: Differential Gene Expression between patients and not groups
6 months ago by
rpolicastro
13k
0
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1
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706
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Comment:
Comment: Bulk RNAseq Salmon index building which transcriptome to use
6 months ago by
rpolicastro
13k
0
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1
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671
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Comment:
Comment: all(rownames(cts) %in% txdf$TXNAME) is FALSE in DTU Analysis in R
6 months ago by
rpolicastro
13k
1
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0
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971
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Comment:
Comment: question regarding the labeling of points on graphs generated by ggplot in R
6 months ago by
rpolicastro
13k
1
vote
0
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900
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Answer:
Answer: Create Seurat Object from matrix and two text files
6 months ago by
rpolicastro
13k
1
vote
2
replies
971
views
Comment:
Comment: question regarding the labeling of points on graphs generated by ggplot in R
6 months ago by
rpolicastro
13k
1
vote
1
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971
views
Comment:
Comment: question regarding the labeling of points on graphs generated by ggplot in R
6 months ago by
rpolicastro
13k
0
votes
1
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900
views
Comment:
Comment: Create Seurat Object from matrix and two text files
6 months ago by
rpolicastro
13k
2
votes
1
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671
views
Answer:
Answer: all(rownames(cts) %in% txdf$TXNAME) is FALSE in DTU Analysis in R
6 months ago by
rpolicastro
13k
1
vote
3
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971
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Comment:
Comment: question regarding the labeling of points on graphs generated by ggplot in R
6 months ago by
rpolicastro
13k
1
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0
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604
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Comment:
Comment: HT-Seq and count matrix
6 months ago by
rpolicastro
13k
2
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1
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604
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Answer:
Answer: HT-Seq and count matrix
6 months ago by
rpolicastro
13k
0
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1
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1.4k
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Comment:
Comment: Get errors in loading packages/ calling functions in sc-seq data analysis
6 months ago by
rpolicastro
13k
0
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1
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450
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Comment:
Comment: How to find transcription factor in my gene set
6 months ago by
rpolicastro
13k
0
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1
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854
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Comment:
Comment: Need help ASAP
6 months ago by
rpolicastro
13k
0
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1
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938
views
Comment:
Comment: Samtools filtering based on PNEXT
6 months ago by
rpolicastro
13k
0
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0
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854
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Comment:
Comment: Need help ASAP
6 months ago by
rpolicastro
13k
2
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0
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598
views
Answer:
Answer: Printing quality scores from fastq file
6 months ago by
rpolicastro
13k
0
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0
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827
views
Comment:
Comment: GSVA Analysis
6 months ago by
rpolicastro
13k
1
vote
1
reply
777
views
Comment:
Comment: FASTA File Concatenation
6 months ago by
rpolicastro
13k
3
votes
2
replies
827
views
Answer:
Answer: GSVA Analysis
6 months ago by
rpolicastro
13k
0
votes
1
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819
views
Comment:
Comment: Use mutate inside for loop and write the results
7 months ago by
rpolicastro
13k
0
votes
0
replies
430
views
Answer:
Answer: QC cut off for snRNAseq data
7 months ago by
rpolicastro
13k
4
votes
1
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840
views
Answer:
Answer: Unable to install Kmergenie
7 months ago by
rpolicastro
13k
1
vote
1
reply
840
views
Comment:
Comment: Unable to install Kmergenie
7 months ago by
rpolicastro
13k
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