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Answer: Answer: Nomalization - TCGA, RNA-seq and Microarray
7 days ago by Zhenyu Zhang ★ 1.2k
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211
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Answer: Answer: Human Methylation Infinum Bead - probe to gene mapping
5 weeks ago by Zhenyu Zhang ★ 1.2k
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585
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Answer: Answer: Artificial deletion in bam
6 weeks ago by Zhenyu Zhang ★ 1.2k
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0
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387
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Answer: Answer: Help with finding Genomic coordinates and exon they belong to
6 weeks ago by Zhenyu Zhang ★ 1.2k
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262
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Answer: Answer: Quantify the junction abundance?
6 weeks ago by Zhenyu Zhang ★ 1.2k
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1
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417
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Answer: Answer: lncRNA from TCGA
6 weeks ago by Zhenyu Zhang ★ 1.2k
2
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348
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Answer: Answer: Can I have multiple active GDC download tokens?
7 weeks ago by Zhenyu Zhang ★ 1.2k
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1
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294
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Answer: Answer: Biobambam vs Picard in RNA Sequencing Analysis for BAM to FASTQ
8 weeks ago by Zhenyu Zhang ★ 1.2k
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320
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Answer: Answer: TCGA clinical data: Multiple measure of response columns in merged clinical xml
9 weeks ago by Zhenyu Zhang ★ 1.2k
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2
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1.5k
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Answer: Answer: Novel sparse optimisation for high accuracy cancer classification on the 33-canc
11 weeks ago by Zhenyu Zhang ★ 1.2k
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1
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335
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Answer: Answer: TCGA metadata intersection
11 weeks ago by Zhenyu Zhang ★ 1.2k
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337
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Answer: Answer: How to find clinical data for TARGET AML
12 weeks ago by Zhenyu Zhang ★ 1.2k
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1
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570
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Answer: Answer: How to find out sample type information of '.rna_seq.augmented_star_gene_counts.
3 months ago by Zhenyu Zhang ★ 1.2k
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1
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969
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Answer: Answer: Is it possible to access the code of a bioinformatics article?
3 months ago by Zhenyu Zhang ★ 1.2k
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1
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510
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Answer: Answer: Help doing differential expression analysis -experimental design and gProfiler T
5 months ago by Zhenyu Zhang ★ 1.2k
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456
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Answer: Answer: Diferences between TCGAbiolinks and cBioportal
5 months ago by Zhenyu Zhang ★ 1.2k
2
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1
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673
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Answer: Answer: Why are there several gene expression files (for example, miRNA) in TCGA for one
6 months ago by Zhenyu Zhang ★ 1.2k
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0
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634
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Answer: Answer: cptac data download
7 months ago by Zhenyu Zhang ★ 1.2k
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1
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896
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Answer: Answer: different sample size between TCGA portal and TCGAbiolinks package
7 months ago by Zhenyu Zhang ★ 1.2k
2
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1
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6.1k
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Answer: Answer: Macbook M1 pro/M2 pro or Dell (with Ubuntu/other linux distribution) for bioinfo
7 months ago by Zhenyu Zhang ★ 1.2k
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0
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554
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Answer: Answer: Problems encountered during the survival analysis with TCGA data
7 months ago by Zhenyu Zhang ★ 1.2k
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753
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Answer: Answer: How to DESeq2 using miRNA data obtained using TCGAbiolinks
8 months ago by Zhenyu Zhang ★ 1.2k
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1
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2.2k
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Answer: Answer: What is the amount of sequencing data produced annually?
8 months ago by Zhenyu Zhang ★ 1.2k
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559
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Answer: Answer: What gene annotation was used for PanCanAtlas EBPlusPlus-corrected RNA-seq TCGA
8 months ago by Zhenyu Zhang ★ 1.2k
1
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0
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945
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Answer: Answer: Grouping TCGA samples by tumor_tissue_site: Can some groups be merged to decreas
9 months ago by Zhenyu Zhang ★ 1.2k
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0
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737
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Answer: Answer: Batch correction of TCGA data from TCGAbiolinks and cBioPortal
9 months ago by Zhenyu Zhang ★ 1.2k
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0
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972
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Answer: Answer: QC Illumina EPIC array: Removing SNPs at CpG sites
9 months ago by Zhenyu Zhang ★ 1.2k
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1
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1.0k
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Answer: Answer: Number of genes covered in WES
9 months ago by Zhenyu Zhang ★ 1.2k
1
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1
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1.4k
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Answer: Answer: DNBseq vs Illumina
9 months ago by Zhenyu Zhang ★ 1.2k
2
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0
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594
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Answer: Answer: Maf File Bar Code
9 months ago by Zhenyu Zhang ★ 1.2k
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1
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771
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Answer: Answer: Ensembl Ref/alt allele discrepancy
9 months ago by Zhenyu Zhang ★ 1.2k
0
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0
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1.3k
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Answer: Answer: Convert files made for b37 into hg19 human reference?
9 months ago by Zhenyu Zhang ★ 1.2k
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0
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1.0k
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Answer: Answer: Methylation Analysis - Missing Chromosome and Position Information for some CpG
9 months ago by Zhenyu Zhang ★ 1.2k
2
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1
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497
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Answer: Answer: Is it ok to do Indel realignment after removing subsets of reads?
10 months ago by Zhenyu Zhang ★ 1.2k
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1
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3.6k
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Answer: Answer: RNA-Seq analysis with Python
10 months ago by Zhenyu Zhang ★ 1.2k
1
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1
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1.1k
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Answer: Answer: Can I liftover hs37d5 to hg38 using hg19ToHg38 chain file?
10 months ago by Zhenyu Zhang ★ 1.2k
1
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1
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1.3k
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Answer: Answer: laptop or PC for the bioinformatics jobs -- specification
10 months ago by Zhenyu Zhang ★ 1.2k
0
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1
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699
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Answer: Answer: Log-transformation of small values with good fold change and P values
10 months ago by Zhenyu Zhang ★ 1.2k
0
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1
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855
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Answer: Answer: cBioPortal data with negative log2(FPKM + 1) values
10 months ago by Zhenyu Zhang ★ 1.2k
0
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1
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484
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Answer: Answer: Multiple Tumor Count Files from a single Patient. How to merge or select?
10 months ago by Zhenyu Zhang ★ 1.2k
0
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0
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841
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Answer: Answer: TCGA methylation data analysis
11 months ago by Zhenyu Zhang ★ 1.2k
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0
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460
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Answer: Answer: Why sone miRNAs are not present in TCGA data
11 months ago by Zhenyu Zhang ★ 1.2k
0
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1
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1.6k
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Answer: Answer: Where can I find a good RNA-seq dataset on cancer?
11 months ago by Zhenyu Zhang ★ 1.2k
1
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0
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377
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Answer: Answer: transcript abundance, control and wgs
11 months ago by Zhenyu Zhang ★ 1.2k
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0
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488
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Answer: Answer: Annotation of gene expression TCGA data
11 months ago by Zhenyu Zhang ★ 1.2k
0
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0
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1.3k
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Answer: Answer: A question about the raw RNA-seq processing workflow
11 months ago by Zhenyu Zhang ★ 1.2k
0
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0
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524
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Answer: Answer: How to download data for a specific time period in GDC portal?
12 months ago by Zhenyu Zhang ★ 1.2k
1
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0
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900
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Answer: Answer: Fast BAM header editing
12 months ago by Zhenyu Zhang ★ 1.2k
0
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0
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587
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Answer: Answer: GDC API: Obtain the Objective Power (or Magnification) of a WSI file
12 months ago by Zhenyu Zhang ★ 1.2k
0
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0
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517
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Answer: Answer: Recent GDC Data Updating Parameters
15 months ago by Zhenyu Zhang ★ 1.2k
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