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Comment: Comment: How to handle duplicated genes in TCGA data?
2 days ago by Zhenyu Zhang ★ 1.2k
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209
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Comment: Comment: Genotyping sites with N in reference genome
4 days ago by Zhenyu Zhang ★ 1.2k
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312
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Comment: Comment: Extracting mutation status from MAF files - TCGA
7 days ago by Zhenyu Zhang ★ 1.2k
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244
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Comment: Comment: Obtaining Infinium Methylation450K manifest for hg38
7 days ago by Zhenyu Zhang ★ 1.2k
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1.2k
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Comment: Comment: The GDC Legacy Archive is retiring soon.
15 days ago by Zhenyu Zhang ★ 1.2k
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1
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640
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Comment: Comment: How to access TCGA samples that were treated with a specific drug?
15 days ago by Zhenyu Zhang ★ 1.2k
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1
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1.0k
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Comment: Comment: Method to detect genome doubling
4 weeks ago by Zhenyu Zhang ★ 1.2k
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325
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Comment: Comment: Are GeneExpression Subtype annotations removed from TCGA-GBM?
5 weeks ago by Zhenyu Zhang ★ 1.2k
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243
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Comment: Comment: How to map CPTAC digital pathology slides to sample ID and metadata
12 weeks ago by Zhenyu Zhang ★ 1.2k
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511
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Comment: Comment: How to identify biallelic mutations called using WES data?
12 weeks ago by Zhenyu Zhang ★ 1.2k
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737
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Comment: Comment: TCGA Biospecimens Slides Extraction
12 weeks ago by Zhenyu Zhang ★ 1.2k
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1
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737
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Comment: Comment: TCGA Biospecimens Slides Extraction
12 weeks ago by Zhenyu Zhang ★ 1.2k
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1
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737
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Comment: Comment: TCGA Biospecimens Slides Extraction
3 months ago by Zhenyu Zhang ★ 1.2k
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1
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414
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Comment: Comment: Normalization of combined normal and tumor tissue samples from GTEx and TCGA pri
3 months ago by Zhenyu Zhang ★ 1.2k
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1
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506
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Comment: Comment: Should centering and scaling be done on methylation beta values for principal co
3 months ago by Zhenyu Zhang ★ 1.2k
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969
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Comment: Comment: Is it possible to access the code of a bioinformatics article?
3 months ago by Zhenyu Zhang ★ 1.2k
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739
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Comment: Comment: Manhattan Plot
3 months ago by Zhenyu Zhang ★ 1.2k
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485
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Comment: Comment: Is it possible to bulk-download gene expression + methylation data for a specifi
3 months ago by Zhenyu Zhang ★ 1.2k
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0
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814
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Comment: Comment: Correlate number of cells with gene expression of one gene in scRNA Seq
4 months ago by Zhenyu Zhang ★ 1.2k
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1
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814
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Comment: Comment: Correlate number of cells with gene expression of one gene in scRNA Seq
4 months ago by Zhenyu Zhang ★ 1.2k
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0
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743
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Comment: Comment: Understanding gene level copy number data from TCGAbiolinks
5 months ago by Zhenyu Zhang ★ 1.2k
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576
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Comment: Comment: Two days_to_last_followups encountered when conducting Survival Analysis with TC
6 months ago by Zhenyu Zhang ★ 1.2k
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495
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Comment: Comment: Appropriate genome reference for converting TCGA VCF files to MAF
6 months ago by Zhenyu Zhang ★ 1.2k
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1
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495
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Comment: Comment: Appropriate genome reference for converting TCGA VCF files to MAF
6 months ago by Zhenyu Zhang ★ 1.2k
1
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673
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Comment: Comment: Why are there several gene expression files (for example, miRNA) in TCGA for one
6 months ago by Zhenyu Zhang ★ 1.2k
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1
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576
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Comment: Comment: Two days_to_last_followups encountered when conducting Survival Analysis with TC
6 months ago by Zhenyu Zhang ★ 1.2k
0
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1
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942
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Comment: Comment: Help locating TCGA data from cbioportal
6 months ago by Zhenyu Zhang ★ 1.2k
1
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896
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Comment: Comment: different sample size between TCGA portal and TCGAbiolinks package
6 months ago by Zhenyu Zhang ★ 1.2k
1
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0
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1.1k
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Comment: Comment: CPTAC data download, transcriptomics
7 months ago by Zhenyu Zhang ★ 1.2k
2
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1.6k
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Comment: Comment: Can BWA (mem) detect longer deletions?
7 months ago by Zhenyu Zhang ★ 1.2k
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1.1k
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Comment: Comment: How does one access TCGA controlled data in AWS S3?
7 months ago by Zhenyu Zhang ★ 1.2k
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1
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1.1k
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Comment: Comment: How does one access TCGA controlled data in AWS S3?
7 months ago by Zhenyu Zhang ★ 1.2k
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2
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1.1k
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Comment: Comment: How does one access TCGA controlled data in AWS S3?
7 months ago by Zhenyu Zhang ★ 1.2k
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0
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665
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Comment: Comment: TPM RNA-seq data for differential expression analysis
7 months ago by Zhenyu Zhang ★ 1.2k
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0
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466
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Comment: Comment: Comparing multiple RNASeq studies
7 months ago by Zhenyu Zhang ★ 1.2k
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1
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1.2k
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Comment: Comment: Calculation of TMB on gene level
7 months ago by Zhenyu Zhang ★ 1.2k
0
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0
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528
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Comment: Comment: Understanding TCGA barcodes with dot in the fieldname
7 months ago by Zhenyu Zhang ★ 1.2k
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0
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795
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Comment: Comment: CNV calling
8 months ago by Zhenyu Zhang ★ 1.2k
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0
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760
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Comment: Comment: Is a PON necessary for tumor-normal matched Mutect2?
8 months ago by Zhenyu Zhang ★ 1.2k
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0
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561
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Comment: Comment: TCGA gene expression quantitation batch information
8 months ago by Zhenyu Zhang ★ 1.2k
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1
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760
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Comment: Comment: Is a PON necessary for tumor-normal matched Mutect2?
8 months ago by Zhenyu Zhang ★ 1.2k
0
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0
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541
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Comment: Comment: Differential gene expression with specif genes of interest
9 months ago by Zhenyu Zhang ★ 1.2k
1
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0
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1.1k
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Comment: Comment: What database would have a list of gene names and aliases for yeast?
9 months ago by Zhenyu Zhang ★ 1.2k
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1
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1.6k
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Comment: Comment: Merge BAM files from (totally) different references
9 months ago by Zhenyu Zhang ★ 1.2k
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0
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682
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Comment: Comment: Is it possible to interpret HGVS without transcript version number?
9 months ago by Zhenyu Zhang ★ 1.2k
1
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1
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945
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Comment: Comment: Grouping TCGA samples by tumor_tissue_site: Can some groups be merged to decreas
9 months ago by Zhenyu Zhang ★ 1.2k
3
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1
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556
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Comment: Comment: Send BAM files from server to cluster
9 months ago by Zhenyu Zhang ★ 1.2k
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0
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781
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Comment: Comment: PON and germline files for Mutect2 Tumor-only mode
9 months ago by Zhenyu Zhang ★ 1.2k
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0
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1.5k
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Comment: Comment: How can I generate a list of 100 genomic intervals from bam files?
9 months ago by Zhenyu Zhang ★ 1.2k
1
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0
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497
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Comment: Comment: Is it ok to do Indel realignment after removing subsets of reads?
10 months ago by Zhenyu Zhang ★ 1.2k
121 results • Page 1 of 3
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