3 minutes ago by
shpak.max
▴
50
1
vote
2
replies
21
views
0
votes
1
reply
25
views
updated 23 minutes ago by
yura.grabovska
▴
70
•
written 51 minutes ago by
ev97
▴
20
0
votes
1
reply
16
views
updated 2 minutes ago by
Pierre Lindenbaum
161k
•
written 51 minutes ago by
hophuquy0944
•
0
0
votes
0
replies
17
views
0
votes
2
replies
38
views
updated 1 hour ago by
GenoMax
142k
•
written 1 hour ago by
jiahangkui1234
•
0
0
votes
1
reply
26
views
1 hour ago by
asalimih
▴
60
0
votes
0
replies
22
views
1
vote
2
replies
60
views
updated 1 hour ago by
Istvan Albert
100k
•
written 2 hours ago by
jsmith120f
•
0
2
votes
2
replies
116
views
1
vote
5
replies
121
views
updated 2 hours ago by
Pierre Lindenbaum
161k
•
written 3 hours ago by
biology_inform
▴
50
0
votes
3
replies
108
views
0
votes
0
replies
46
views
updated 2 hours ago by
ATpoint
82k
•
written 3 hours ago by
yura.grabovska
▴
70
0
votes
0
replies
38
views
0
votes
3
replies
87
views
0
votes
2
replies
99
views
0
votes
2
replies
70
views
updated 4 hours ago by
Pierre Lindenbaum
161k
•
written 6 hours ago by
kl
▴
10
0
votes
8
replies
205
views
0
votes
3
replies
96
views
0
votes
1
reply
96
views
1
vote
1
reply
90
views
1
vote
1
reply
175
views
0
votes
1
reply
100
views
updated 9 hours ago by
Pierre Lindenbaum
161k
•
written 12 hours ago by
Arton
•
0
0
votes
0
replies
50
views
9 hours ago by
Shaimaa Gamal
▴
10
0
votes
0
replies
47
views
0
votes
1
reply
88
views
0
votes
1
reply
92
views
0
votes
0
replies
65
views
0
votes
0
replies
61
views
15 hours ago by
brunofelicianodeomena
•
0
1
vote
2
replies
153
views
updated 10 hours ago by
colindaven
6.4k
•
written 17 hours ago by
mbrav005
•
0
0
votes
1
reply
111
views
0
votes
1
reply
112
views
updated 19 hours ago by
Mensur Dlakic
★
27k
•
written 20 hours ago by
MarcosCosta
•
0
2
votes
2
replies
170
views
updated 21 hours ago by
GenoMax
142k
•
written 21 hours ago by
dlera.lozano
▴
10
2
votes
3
replies
177
views
0
votes
3
replies
212
views
updated 1 hour ago by
jared.andrews07
★
16k
•
written 22 hours ago by
jen
▴
10
0
votes
1
reply
137
views
0
votes
3
replies
223
views
0
votes
1
reply
123
views
updated 23 hours ago by
LauferVA
4.2k
•
written 1 day ago by
graeme.thorn
▴
100
0
votes
2
replies
153
views
0
votes
0
replies
92
views
1 day ago by
ramiro.barrantes
•
0
4
votes
1
reply
180
views
0
votes
0
replies
92
views
1 day ago by
jennyp0706
•
0
0
votes
3
replies
189
views
1
vote
1
reply
127
views
updated 23 hours ago by
Ram
43k
•
written 1 day ago by
kilcdincer
▴
10
0
votes
0
replies
82
views
4
votes
4
replies
2.9k
views
1
vote
7
replies
357
views
13 hours ago by
ntsopoul
▴
60
0
votes
3
replies
186
views
0
votes
1
reply
167
views
1
vote
1
reply
164
views
0
votes
1
reply
125
views
Recent Votes
Recent Locations •
All
United States, just now
United States, 1 minute ago
France, 3 minutes ago
Whitefish, MT, 4 minutes ago
United States, 4 minutes ago
Sheffield, UK, 5 minutes ago
Turkey, 6 minutes ago
Recent Awards •
All
Scholar to
rpolicastro
13k
Popular Question to
Amr
▴
160
Popular Question to
asalimih
▴
60
Popular Question to
nd48
▴
20
Popular Question to
biology_inform
▴
50
Popular Question to
Joe
21k
Recent Replies
Answer: Genotyping sites with N in reference genome
by
Pierre Lindenbaum
161k
> Does UnifiedGenotyper skip/ignore sites where the reference genotype is N
yes. The variant is in YOUR data, not in the reference where '…
Comment: Can 5' and 3' scRNAseq be processed with the same pipeline?
by
yura.grabovska
▴
70
Do you have samples that should in theory have a good degree over overlap in terms of cell types across the two sequencing types?
I would …
Comment: Wrong ZYGOSITY by ensembl vep on DeepVariant vcf file
by
asalimih
▴
60
I found out that vep is only checking the GT field therefore assigning HOM to the Zygosity. Therefore the problem should be from deepvarian…
Comment: Add stats to boxplot in R
by
Lélé
•
0
To remove "Kruskall Wallis" you can try adding the argument label="p" or label = "p.signif" which displays the p-value or *** like this:
…
Answer: Sequencing Depth (Read Depth) Calculations
by
GenoMax
142k
You could also use `pandepth` ([**LINK**][1]) or `mosdepth` ([**LINK**][2]) as well. These will allow you to be flexible about windowed cov…
Comment: Sequencing Depth (Read Depth) Calculations
by
Pierre Lindenbaum
161k
it looks looks ok to me.
<!-- This cmd works and gives me 40.5235, I was wondering whether this cmd is right or wrong, and does anyone hav…
Comment: Add stats to boxplot in R
by
Ghada
•
0
Great. thats work. Do you know how can I remove the kruskall-Wallis name from the plot? Also I would like to draw a line under the kruskall…
Comment: Using ggplotly in R
by
jared.andrews07
★
16k
Again, this is not particularly difficult to do with [plotly itself](https://plotly.com/r/line-and-scatter/#adding-color-and-size-mapping) …
Comment: Duplicated reads (IDs) from nanopore sequencing
by
GenoMax
142k
If you only have supplementary alignments then they may be caused by reasons mentioned here --> https://www.biostars.org/p/308853/ I did no…
Comment: Cannot install bwa-mem2 via conda
by
Pierre Lindenbaum
161k
> Please do not paste screenshots of plain text content, it is counterproductive. You can copy paste the content directly here (using the c…
Answer: Cannot install bwa-mem2 via conda
by
Istvan Albert
100k
The problem is caused by running the ARM-based conda. Bioinformatics software is compiled for Intel based CPUs only.
Uninstall that versio…
Comment: Duplicated reads (IDs) from nanopore sequencing
by
marco.barr
▴
110
[https://www.biostars.org/p/9559284/][1] you could try this
[1]: https://www.biostars.org/p/9559284/
Comment: Duplicated reads (IDs) from nanopore sequencing
by
marco.barr
▴
110
it's also true that now I only have one pod5 folder, thanks anyway for clarifying the focus of the issue. Yes, they are probably secondary …
Comment: Applying the metacell2 algorithm using python
by
Wayne
★
2.0k
I'm unsure. I will say that looking for [ normalize](https://github.com/search?q=repo%3Atanaylab%2Fmetacells%20normalize&type=code) among t…
Comment: Circos Plot to Visualize Chromatin Accessibility Changes from ATAC-seq Data
by
Pierre Lindenbaum
161k
> Please do not paste screenshots of plain text content, it is counterproductive. You can copy paste the content directly here (using the c…
Traffic: 2594 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6