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News: Integrated Genome Browser (IGB) Office Hours
Integrated-Genome-Browser IGB
updated 10 weeks ago by 43k • written 10 weeks ago by • 0
0
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0
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205
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News: Online course: Network Analysis in Systems Biology with R/Bioconductor
R RNA-seq Network-Analysis Bioconductor Systems-Biology
updated 10 weeks ago by 43k • written 10 weeks ago by ★ 2.5k
0
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0
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239
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News: The 2024 Canadian Bioinformatics Workshops are here!
CBW workshop training
10 weeks ago by bioinformatics.ca • 0
0
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0
replies
190
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News: Live online course Data Manipulation with R Tidyverse, 3 and 5 of April
R manipulation tidyverse data
10 weeks ago by Sole • 0
0
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0
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216
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News: Online course: Reproducibility in Bioinformatics
Docker Singularity WorkflowManagementSystems Reproducibility
11 weeks ago by carlopecoraro2 ★ 2.5k
0
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276
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News: Online course: Genome Assembly Using Oxford Nanopore Sequencing - 4 seats remaining
GenomeAssembly Nanopore longreads
11 weeks ago by carlopecoraro2 ★ 2.5k
0
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0
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251
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News: Webinar about scRNA-seq cell type prediction
scRNAseq
updated 11 weeks ago by 142k • written 11 weeks ago by • 0
0
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0
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269
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News: Online course: Spatial Omics in R/Bioconductor
R Spatial-Omics Bioconductor tidyverse transcriptomics
updated 11 weeks ago by 43k • written 11 weeks ago by ★ 2.5k
0
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0
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226
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News: Online course: Model-Based Demographic Inference from Population Genomics
Demographic-Inference Population-Genomics Demographic-Models
updated 12 weeks ago by 43k • written 12 weeks ago by ★ 2.5k
0
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0
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205
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News: Online course: R/Bioconductor for Mass Spectrometry and Proteomics
R Proteomics Bioconductor Mass-Spectrometry
updated 12 weeks ago by 43k • written 12 weeks ago by ★ 2.5k
0
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0
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210
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News: Virtual Workshops with the UConn Computational Biology Core
Workshop genomics
updated 3 months ago by 142k • written 3 months ago by ▴ 10
0
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0
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195
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News: NGS Data Analysis Courses for Absolute Beginners
NGS DNAseq RNAseq singlecellsequencing DataAnalysis
3 months ago by David Langenberger 11k
0
votes
0
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208
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News: Online course: Genome Assembly and Annotation
Annotation Genome-Assembly Nanopore Pacbio
updated 3 months ago by 43k • written 3 months ago by ★ 2.5k
0
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0
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194
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News: Online course: Computation Tumor Evolution
R Cancer-Genomics Tumor-Evolution Genomics
updated 3 months ago by 43k • written 3 months ago by ★ 2.5k
0
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0
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191
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News: Course live online Intro Bayesian Analyses, March 4-8, 2024
R python bayesian
3 months ago by Sole • 0
0
votes
1
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977
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News: FINAL CALL: RNA-Seq Data Analysis Workshop (March 11 - 14, 2024 in Berlin, Germany)
NGS RNA-Seq Workshop
3 months ago by David Langenberger 11k
0
votes
0
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240
views
News: Online course : Meta-Analysis in R
R Meta-Analysis Statistics
updated 3 months ago by 43k • written 3 months ago by ★ 2.5k
1
vote
0
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203
views
News: Cellosaurus release 48 is available
cell-line biocuration cellosaurus knowledgebase
3 months ago by Amos Bairoch ▴ 120
0
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0
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239
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News: Online course: Genome Assembly Using Oxford Nanopore Sequencing
Genome-Assembly Nanopore
updated 3 months ago by 43k • written 3 months ago by ★ 2.5k
0
votes
0
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262
views
News: BLAST FASTA Files Will No Longer Be Available on the FTP Site Effective April 2024
NCBI BLAST
3 months ago by PeterC_NCBI ▴ 410
0
votes
0
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246
views
News: EMBL-EBI Training | Systems biology: from large datasets to biological insight
systems
3 months ago by EMBL Events ▴ 10
0
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0
replies
212
views
News: Online course - Sex Chromosome Evolution
Evolution Genomics Sex-Chromosome
updated 3 months ago by 43k • written 3 months ago by ★ 2.5k
0
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1
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826
views
News: LAST CALL: Online Course - A Practical Introduction to NGS Data Analysis (February 28 - March 1, 2024)
NGS Online-Workshop
updated 3 months ago by 43k • written 3 months ago by 11k
7
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2
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1.2k
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News: NGS Data Analysis Workshops 2024
scRNA-seq dna-seq rna-seq nextflow
3 months ago by David Langenberger 11k
0
votes
0
replies
244
views
News: Online course: Generalized Additive Models (GAMs) in R
R Statistics Gams
4 months ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
273
views
News: Online course - Introduction to Python for biologists
Python Programming NGSData
4 months ago by carlopecoraro2 ★ 2.5k
1
vote
0
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213
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News: Online course - Introduction to Machine Learning in R for omics data
R Omics MachineLearning StatisticalLearning
4 months ago by carlopecoraro2 ★ 2.5k
0
votes
0
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204
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News: Online course - Flow cytometry data analysis with R/Bioconductor
R Flow-Cytometry Bioconductor
updated 4 months ago by 43k • written 4 months ago by ★ 2.5k
0
votes
1
reply
336
views
News: Reminder: NCBI ClinVar XML update to accommodate somatic variants coming Jan 29, 2024
SNP XML ClinVar NCBI
4 months ago by PeterC_NCBI ▴ 410
4
votes
0
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216
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News: Transform Your Research with Our NGS Data Analysis Online Course!
DNAseq NGS Biologists OnlineCourse RNAseq
4 months ago by David Langenberger 11k
0
votes
0
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260
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News: 3rd edition of the Winter School in Bioinformatics - Online February 26 - March 1
genomics reproducibility phylogenomics transcriptomics
4 months ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
585
views
News: course - Reproducibility in Bioinformatics
Docker Reproducibility
written 13 months ago by ★ 2.5k
0
votes
1
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393
views
News: Online Course - Genomic Prediction
Genomic-Prediction Selective-Breeding
updated 4 months ago by 43k • written 4 months ago by ★ 2.5k
0
votes
0
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287
views
News: Flow cytometry data analysis with R/Bioconductor course
FlowCytometry R Bioconductor
4 months ago by carlopecoraro2 ★ 2.5k
2
votes
2
replies
542
views
News: Unix and Shell Scripting for Bioinformatics course
Bash Unix Shell-Scripting
4 months ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
331
views
News: Bayesian Data Analysis in R course
R Bayesian-Statistics
updated 4 months ago by 43k • written 4 months ago by ★ 2.5k
0
votes
0
replies
341
views
News: Practical Hands-On Introduction to R course
R Tidyverse Data-Analysis
updated 5 months ago by 43k • written 5 months ago by ★ 2.5k
0
votes
0
replies
305
views
News: Landscape Genomics course at the EPFL in Lausanne, Switzerland
genomics Landscape-Genomics
updated 5 months ago by 43k • written 5 months ago by ★ 2.5k
0
votes
0
replies
294
views
News: New version of ElasticBLAST (1.2.0) available from NCBI
ElasticBLAST NCBI BLAST
5 months ago by PeterC_NCBI ▴ 410
0
votes
0
replies
288
views
News: Course. - Gene Set Enrichment Analysis in R/Bioconductor - ONLINE, 22-25 January
R Gene-Set-Enrichment-Analysis GSEA Bioconductor
updated 4 months ago by 43k • written 5 months ago by ★ 2.5k
0
votes
0
replies
304
views
News: University of Connecticut Single Cell RNA-seq Workshop December 12-15, 2023
expression singlecell rnaseq
5 months ago by mia.nahom ▴ 10
0
votes
0
replies
284
views
News: Online course: Introduction to Python, February 12th-March 11th, 2024
python courses
5 months ago by Sole • 0
0
votes
1
reply
388
views
News: Course: Genome Assembly and Annotation
Biodiversity Genome-Assembly Genome-Annotation Long-reads
updated 5 months ago by 43k • written 5 months ago by ★ 2.5k
0
votes
0
replies
358
views
News: GWAS course
R GWAS
updated 5 months ago by 43k • written 5 months ago by ★ 2.5k
3
votes
0
replies
309
views
News: NCBI BLAST+ 2.2.15 now available for download
NCBI Taxonomy BLAST
5 months ago by PeterC_NCBI ▴ 410
0
votes
0
replies
314
views
News: Course - Introduction to R Shiny
R Data-Visualisation Shiny
updated 5 months ago by 43k • written 5 months ago by ★ 2.5k
0
votes
0
replies
285
views
News: Online expert taught RNA-Seq workshop
workshop
5 months ago by fturner ▴ 10
0
votes
0
replies
330
views
News: Course - RNAseq in non-model organisms
Pacbio RNA-seq Nanopore
updated 5 months ago by 43k • written 5 months ago by ★ 2.5k
0
votes
0
replies
343
views
News: Next-Generation Sequencing Data Analysis: A Practical Introduction (Nov 29 – Dec 1 in Munich, Germany)
RNAseq DNAseq NGS Workshop
5 months ago by Lars ★ 1.0k
0
votes
0
replies
331
views
News: Course - Computational Tumor Evolution
Tumor-Evolution Cancer-Genomics
updated 5 months ago by 43k • written 5 months ago by ★ 2.5k
1,000 results • Page 2 of 20
Recent Votes
Answer: Is there any way to modify this pie chart ?
Comment: Getting the coding_sequence.fasta from the .gff file from the AUGUSTUS gene pred
A: How can I convert -log10 (p-value) to p-value?
Comment: What does the 'E%' represent in BUSCO results?
Answer: What does the 'E%' represent in BUSCO results?
Answer: Combine Two Affymetrix Datasets With Same Platform
Comment: Kraken2 database
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Recent Replies
Comment: Is it necessary to do genotype quality filteration after snp calling with GATK by IdaHao0921 • 0
The species I study is not a model species, VQSR can not be applied here. I already used gatk hard-filtering. I mean, after hard-filtering,…
Answer: Overlapping Ranges within Granges object by Alex Reynolds 35k
If you're not tied to Granges, you could use `bedmap --fraction-both 0.1` to require at least 10% overlap between reference and map regions…
Comment: Getting the coding_sequence.fasta from the .gff file from the AUGUSTUS gene pred by Vijith ▴ 30
By doing some online search, I tried installing one module `cpan Bio::DB::Fasta` and it is running like a never-ending installation process…
Comment: Getting the coding_sequence.fasta from the .gff file from the AUGUSTUS gene pred by Vijith ▴ 30
I have tried installing AGAT. But it failed the tests. …
Comment: BWA alignment by ATpoint 82k
That is not what the logs above tell, but good you solved it.
Answer: Inquiry about deseq2 transformation by ATpoint 82k
The transformations first correct for sequencing depth (and [composition][1]) and then apply the variance stabilization / regularization. N…
Answer: The total expressed genes in RNA-Seq data by ATpoint 82k
There is no robust definition of "expressed" genes, this has been asked many times before. edgeR doesn't care about "expressed", it cares (…
Answer: What is the bin size for Bamcompare? by ATpoint 82k
It is the number of adjacent bases that are aggregated (binned) into a single value. I find binning not optimal, and would always set this …
Comment: Is it necessary to do genotype quality filteration after snp calling with GATK by Pierre Lindenbaum 161k
see VQSR https://gatk.broadinstitute.org/hc/en-us/articles/360035531612-Variant-Quality-Score-Recalibration-VQSR and https://gatk.broadinst…
Comment: Snakemake wrapper issue by Matvii Mykhailichenko • 0
Hi, I kind of did and kind of didn't: I stopped trying to use snakemake( I remember that it's a lot of hustle to install pickard, maybe you…
Answer: Is there any way to modify this pie chart ? by marco.barr ▴ 110
Hi, you can add the labels outside chart using `geom_label_repel` from `ggrepel` package. Check out this guide [https://r-charts.com/part…
Answer: Snakemake wrapper issue by Wei-Chen Pan • 0
Hi, did you solve your problem ? I also encounter same issue but it's `wrapper:"v3.9.0/bio/picard/mergevcfs"`. In my log file, it said:…
Comment: What does the 'E%' represent in BUSCO results? by Philipp Bayer 8.5k
No worries! I found the commit with the maths too: https://gitlab.com/ezlab/busco/-/blame/master/src/busco/busco_tools/hmmer.py?page=2#L135…
Comment: What does the 'E%' represent in BUSCO results? by 林明德 • 0
Thank you for your answer! It really helped me resolve a doubt!
Answer: What does the 'E%' represent in BUSCO results? by Philipp Bayer 8.5k
Ah your edit solved this. 50 BUSCOs contain internal stop codons, indicating they might be erroneous gene models, or the genes themselves a…
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