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1,000 results • Page
2 of 20
Sort: Rank
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Votes
Replies
0
votes
1
reply
218
views
How to convert Haps file to vcf file?
pre-phasing
GWAS
imputation
updated 5 days ago by
curious
▴ 750 • written 5 days ago by
SeoGyun
• 0
0
votes
0
replies
154
views
Trouble converting tfam and tped to map and ped files
plink
ped
tfam
tped
map
5 days ago by
Samantha
• 0
0
votes
1
reply
189
views
Microbial Signal Transduction Database
MiST
updated 5 days ago by
zx8754
11k • written 5 days ago by
Shravani
• 0
0
votes
0
replies
142
views
Allele specific expression of imprinted gens from 10x scRNA-seq data
scrna-seq
imprinted
10x
genes
5 days ago by
singcell
• 0
0
votes
1
reply
213
views
When should I use R-MarkDown over R-Script ?
r
rscript
rmarkdown
updated 5 days ago by
ATpoint
82k • written 5 days ago by
Amr
▴ 160
0
votes
2
replies
224
views
LncRNA Nomenclature
ENST
nomenclature
lncrna
GBB
ENSG
5 days ago by
jain72744
▴ 10
3
votes
1
reply
204
views
Question about methylation location
Methylation
WGBS
bisulfide
updated 5 days ago by
dthorbur
★ 2.0k • written 6 days ago by
Eren
• 0
0
votes
0
replies
152
views
Krona Pie-chart taxanomy IDs were not found warning. Taxonomy Classification Metagenomics
Classification
Metagenomics
Krona
Kraken2
6 days ago by
Aytaç
• 0
0
votes
0
replies
167
views
How do I calculate SE or P value if I only have BETA
prscsx
beta
se
pvalue
updated 5 days ago by
zx8754
11k • written 6 days ago by
curious_butterfly
• 0
0
votes
0
replies
157
views
supervised admixture
supervised
admixture
6 days ago by
RT
▴ 10
0
votes
2
replies
224
views
Presence of unknown sites in ANNOVAR output file
ANNOVAR
updated 5 days ago by
Ram
43k • written 6 days ago by
sainavyav22
• 0
3
votes
4
replies
313
views
Truncated metadata file report from ENA Portal API
ena
python
5 days ago by
Giulia
• 0
0
votes
0
replies
187
views
What is workflow for de-novo assembling of nuclear and mito genomes of non-model organisms
de-novo
WGS
DNA-seq
assembling
6 days ago by
Matvii Mykhailichenko
• 0
0
votes
1
reply
151
views
input file for alternative splicing in rmats in linux
rmats
updated 6 days ago by
Ram
43k • written 6 days ago by
Lambodarswain316
• 0
1
vote
1
reply
448
views
ComBat_Seq stuck adjusting the data
Batch-Effect
RNAseq
ComBat-Seq
updated 6 days ago by
Jaïr
• 0 • written 4 months ago by
NorbertK
▴ 10
1
vote
0
replies
138
views
What is Deepvariant default filtering values ?
vcf
calling
filter
variant
deepvariant
6 days ago by
Shae
▴ 10
1
vote
1
reply
158
views
Conda severely broken after attempting mamba install
biopython
conda
mamba
pycosat
updated 6 days ago by
andres.firrincieli
3.6k • written 6 days ago by
kacollier
▴ 30
0
votes
0
replies
117
views
Summary Statistics SNPs not found in Target data
SNP
plink
PRS
updated 6 days ago by
Ram
43k • written 6 days ago by
curious_butterfly
• 0
1
vote
3
replies
254
views
Help with Biopython for Beginner
Python
ORF
FASTA
Biopython
updated 6 days ago by
GenoMax
142k • written 7 days ago by
cput
• 0
0
votes
0
replies
121
views
Annotate VCF via VEP for gnomAD annotation considering FILTER column
vep
vcf
gnomad
7 days ago by
asalimih
▴ 60
0
votes
9
replies
1.5k
views
kinannote software installation problems
kinannote
updated 7 days ago by
Emanoelle
• 0 • written 5.8 years ago by
Elizabeth
▴ 30
0
votes
0
replies
107
views
Pathway analysis of Bacteria from denovo genome assembly
KEGG-KASS
WGS
Pathway
denovo
updated 7 days ago by
Ram
43k • written 7 days ago by
mathavanbioinfo
▴ 90
3
votes
4
replies
4.0k
views
FarmCPU - how to explain the reported 'effect'?
gwas
updated 7 days ago by
chloek88
• 0 • written 5.5 years ago by
Philipp Bayer
8.5k
4
votes
7
replies
465
views
RNA seq analysis
DESeq
RNA-seq
15 hours ago by
Jacek
▴ 10
0
votes
0
replies
145
views
Chance for trained without experience
bio
updated 7 days ago by
ATpoint
82k • written 7 days ago by
shehab
• 0
0
votes
0
replies
124
views
Xenium multi sample data
batch
annotation
cell
Xenium
effect
7 days ago by
Omics data mining
▴ 260
0
votes
2
replies
185
views
Phasing a mixture of two individuals' DNA with long reads
long-reads
phasing
7 days ago by
njornet
▴ 20
0
votes
2
replies
212
views
Exploring Diet Effects in Single-Cell RNA Sequencing
batch_effect
scRNA
seurat
integration
updated 7 days ago by
Adam
▴ 30 • written 7 days ago by
Darya
• 0
0
votes
5
replies
269
views
Percentage coverage of reference genome by de novo genome
SAMtools
BWA
alignment
ddRAD
updated 7 days ago by
Joe
21k • written 7 days ago by
Lemonhope
• 0
0
votes
0
replies
180
views
Why does my Hi-C contact map show large regions making little to no contact?
BWA-MEM2
Hi-C
PretextMap
6 days ago by
Winter
• 0
0
votes
0
replies
108
views
meffil.snp.concordance
meffil
methylation
snp_concordance
7 days ago by
kyj222637
• 0
0
votes
1
reply
158
views
PseudobulkExpression.Seurat error
Seurat
pseudo-bulk
updated 7 days ago by
Bastien Hervé
5.3k • written 8 days ago by
sooni
▴ 20
1
vote
3
replies
251
views
STAR aligner error
RNA-seq
STAR
slurm
updated 7 days ago by
Ram
43k • written 8 days ago by
M.
▴ 30
0
votes
0
replies
101
views
monocle 3-- Could not get node in small cluster
monocle3
8 days ago by
synat.keam
▴ 100
0
votes
2
replies
212
views
Correlating Bulk Differential Expression with quantitative
Differential-Expression
DESeq2
7 days ago by
Nicholas
• 0
0
votes
1
reply
262
views
ERROR: Duplicate entry "..." in sam header; samtools view: failed to add PG line to the header
sort.
SAMtools.
BAM.
SAM.
updated 8 days ago by
GenoMax
142k • written 8 days ago by
Sony
▴ 10
5
votes
5
replies
303
views
Error in dimnames(x) <- dn : length of 'dimnames' [2] not equal to array extent
EGSEA
7 days ago by
Chris
▴ 280
0
votes
2
replies
225
views
Differentail gene expression results
differential
expression
gene
rna-seq
Deseq2
updated 7 days ago by
swbarnes2
14k • written 8 days ago by
ahmad.sajad4541
• 0
1
vote
9
replies
383
views
UMI-Tools knee-method has great influence on the results of white list
single-cell
whitelist
UMI
RNA
UMI-Tools
updated 5 days ago by
i.sudbery
19k • written 8 days ago by
Assa Yeroslaviz
★ 1.8k
1
vote
1
reply
172
views
student
epitranscriptomics
updated 8 days ago by
ATpoint
82k • written 8 days ago by
useriwa
• 0
0
votes
3
replies
183
views
trying to count a pattern in my fastq file using bbduk
java
bbduk
bbmap
fastq
updated 8 days ago by
GenoMax
142k • written 8 days ago by
Assa Yeroslaviz
★ 1.8k
0
votes
4
replies
297
views
Correlation Analysis
statistics
methylation
NGS
expression
4 days ago by
Researcher
▴ 30
1
vote
2
replies
187
views
Repeated testing/data mining in RNA Seq
repeated
RNA-Seq
mining
testing
data
8 days ago by
robert.flynn.21
• 0
0
votes
0
replies
118
views
Get Paired TCRa/b from MIXCR
python
r
mixcr
tcr_seq
9 days ago by
Scott McKay
▴ 30
0
votes
0
replies
109
views
Cellphonedb results
cpdb
visulization
cellphonedb
9 days ago by
piotto
▴ 20
0
votes
0
replies
119
views
Cox Model with interaction item interpretation
Cox
9 days ago by
Bine
▴ 60
0
votes
0
replies
106
views
how to downlad slices of CRAM fro ICGC ARGO
icgc
samtools
cram
6 days ago by
Javier
• 0
1
vote
7
replies
529
views
Question regarding WGCNA
WGCNA
Network-construction
6 days ago by
deepak
• 0
0
votes
0
replies
110
views
vdjtools
vdjtools
9 days ago by
yueli7
▴ 250
0
votes
1
reply
296
views
16S rRNA microbiome differential abundance analysis with DESeq2 finds same microbial Genus in both groups.
microbiome
16S
DESeq2
updated 8 days ago by
andres.firrincieli
3.6k • written 9 days ago by
Antonio
• 0
1,000 results • Page
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Comment: How to calculate coverage of Nanopore long read data?
Answer: In one PCA plot, can I calculate the percentage of different factors that contri
Answer: Calculate allelic frequency from VEP output vcf file
Answer: How can you *consistently* download BioProject IDs from NCBI's BioSample databas
Answer: Cluster sub-set analysis using Seurat
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Comment: bbmerge (bbmap) ~ error with insert size file output
by
chrisk
• 0
Hi Brian, Thank you and apologies for the extra future revision works. Out of curiosity we disabled neural networks 'nn=f' and the file o…
Comment: bbmerge (bbmap) ~ error with insert size file output
by
chrisk
• 0
Hi Genomax, This is the thread: https://www.biostars.org/p/9582467/ Cheers, Chris
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that's helpful, thanks :)
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20k
Ah, this is a little embarrassing; those are the vectors for the neural network. I overloaded a field that was being used for the insert s…
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kl
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Thanks - I corrected it. It doesn't seem to annotate. I converted to binary after which is what is shown below. It is not the output I want…
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by
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▴ 10
These are valid questions. Does your code address the concerns you've raised? From what I understand, FilterVcf is primarily designed for h…
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Found the answer here!! https://github.com/Illumina/strelka/blob/master/docs/userGuide/README.md#somatic Although this leads to a str…
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Hi, regardless of how you generated the data whether with DESeq2 or other pipeline, your differential expression matrix can be used as inpu…
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Thank you very much, you've helped me a lot. Could you suggest a book or article that offers a complete explanation of these processes?
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Thank you. I can't try a completely new tool but I will keep your command for future use. Do you think my commands were correct? For exampl…
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Thanks. Thats work
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