5 hours ago by
雨
▴
20
0
votes
0
replies
32
views
0
votes
1
reply
108
views
updated 6 hours ago by
Rory Stark
★
2.1k
•
written 12 hours ago by
buffealo
▴
130
1
vote
7
replies
1.4k
views
77
votes
30
replies
31k
views
18 follow
updated 10 hours ago by
Paulo
•
0
•
written 11.1 years ago by
Istvan Albert
102k
835
votes
169
replies
172k
views
110 follow
updated 6 months ago by
Biostar
3.4k
•
written 8.3 years ago by
Istvan Albert
102k
0
votes
4
replies
133
views
0
votes
0
replies
53
views
10 hours ago by
Franck
•
0
1
vote
4
replies
210
views
12 hours ago by
dk7258859
•
0
0
votes
8
replies
177
views
updated 5 hours ago by
Pierre Lindenbaum
165k
•
written 13 hours ago by
totoroGirl
•
0
1
vote
5
replies
139
views
0
votes
1
reply
114
views
updated 17 hours ago by
i.sudbery
21k
•
written 1 day ago by
Alana Conceição Maia Lessa
•
0
0
votes
1
reply
111
views
updated 17 hours ago by
colindaven
7.3k
•
written 1 day ago by
gulin
•
0
0
votes
5
replies
171
views
updated 14 hours ago by
GenoMax
150k
•
written 19 hours ago by
paulanavarrete116
•
0
2
votes
2
replies
198
views
0
votes
0
replies
92
views
1 day ago by
kbranger
•
0
8
votes
12
replies
321
views
0
votes
3
replies
141
views
1
vote
2
replies
143
views
0
votes
2
replies
142
views
1
vote
1
reply
92
views
0
votes
1
reply
107
views
1
vote
5
replies
347
views
1
vote
1
reply
112
views
2
votes
2
replies
239
views
3 hours ago by
Jl
•
0
1
vote
3
replies
154
views
0
votes
1
reply
119
views
updated 1 day ago by
lieven.sterck
15k
•
written 1 day ago by
Naila
•
0
1
vote
4
replies
167
views
1 day ago by
SomeOne
▴
170
1
vote
7
replies
235
views
updated 1 day ago by
yura.grabovska
▴
750
•
written 1 day ago by
zhang616123
•
0
0
votes
3
replies
176
views
updated 20 hours ago by
Bastien Hervé
6.2k
•
written 1 day ago by
Jonathan Yoou
▴
70
0
votes
0
replies
96
views
1 day ago by
soledad.esteban
•
0
0
votes
4
replies
173
views
1
vote
14
replies
501
views
updated 1 day ago by
colindaven
7.3k
•
written 2 days ago by
ZuelTech
•
0
1
vote
4
replies
1.1k
views
updated 2 days ago by
swbarnes2
14k
•
written 4 days ago by
Wu-Sheng Zhang
•
0
1
vote
4
replies
243
views
3
votes
8
replies
276
views
0
votes
1
reply
163
views
updated 2 days ago by
chrchang523
11k
•
written 2 days ago by
Smilesky
•
0
0
votes
0
replies
104
views
0
votes
0
replies
117
views
2 days ago by
Physalia-courses
★
2.6k
0
votes
2
replies
178
views
0
votes
0
replies
122
views
1
vote
0
replies
213
views
0
votes
2
replies
309
views
0
votes
0
replies
208
views
updated 4 days ago by
Pierre Lindenbaum
165k
•
written 4 days ago by
swarnadurga66666m
•
0
0
votes
1
reply
245
views
updated 4 days ago by
GenoMax
150k
•
written 4 days ago by
Yongjie Zhang
▴
110
0
votes
1
reply
250
views
updated 4 days ago by
Mensur Dlakic
★
29k
•
written 4 days ago by
Yongjie Zhang
▴
110
2
votes
3
replies
2.3k
views
updated 4 days ago by
Dan A
•
0
•
written 3.7 years ago by
Agenor Neto
▴
10
1
vote
1
reply
274
views
0
votes
0
replies
205
views
0
votes
2
replies
349
views
updated 5 days ago by
Istvan Albert
102k
•
written 5 days ago by
louis-gil
•
0
2
votes
1
reply
464
views
Recent Votes
Recent Locations •
All
United States, 10 minutes ago
Hong Kong, 11 minutes ago
Australia, 20 minutes ago
United States, 27 minutes ago
United States, 29 minutes ago
Vancouver, 34 minutes ago
Whitefish, MT, 36 minutes ago
Recent Awards •
All
Popular Question to
雨
▴
20
Popular Question to
karlensberg
•
0
Popular Question to
buffealo
▴
130
Voter to
Maxime Garcia
▴
350
Popular Question to
A_heath
▴
170
Popular Question to
totoroGirl
•
0
Popular Question to
tritone_858
•
0
Recent Replies
Comment: FastQC on nanopore data: high proportion of polyA and polyG. Why ?
by
GenoMax
150k
Have you considered contacting PacBio support? If they have any specific explanations please come back to this thread to add them here.
Comment: FastQC on nanopore data: high proportion of polyA and polyG. Why ?
by
vkaz
•
0
Yes, I am referring to PacBio HiFi data (even though original question was about nanopore data)
Comment: Alternatives to UCSC genome browser for obtaining gene coordinates
by
shpak.max
▴
50
Thank you for the reference, I'll look into it.
Incidentally, among other issues, UCSC Table browser feature seems to be buggy - for about…
Comment: Find the reads which correspond to DP of vcf
by
Pierre Lindenbaum
165k
very strange. Can you please , upload the file below in a new issue : https://github.com/lindenb/jvarkit/issues
```
samtools view -h in.b…
Comment: FastQC on nanopore data: high proportion of polyA and polyG. Why ?
by
GenoMax
150k
Original question was about nanopore data. Are you referring to PacBio HiFi data?
Answer: DiffBind normalization error: invalid argument type (list) - cannot make it work
by
Rory Stark
★
2.1k
If your peaks are in `narrowPeak` format, it may help to set the `PeakCaller` to `"narrow"`.
Comment: FastQC on nanopore data: high proportion of polyA and polyG. Why ?
by
vkaz
•
0
@Matt -- Hi, did you figure out about the cause of poly-A spike in your reads? I have similar problem in genomic HiFi reads.
Comment: Find the reads which correspond to DP of vcf
by
totoroGirl
•
0
Okay so I used the command which you mentioned earlier, since I only want the reads which have a G to T substitution, I parsed the output s…
Comment: How To Separate Illumina Based Strand Specific Rna-Seq Alignments By Strand
by
Paulo
•
0
Hi Istvan!
This was exactly what I was looking for! Amazing how 11 years after, this post is still usefull and active :)
I have a que…
Comment: Larger genome size than expected-please help
by
GenoMax
150k
> The problem is that they all have many contigs (over 300)
That may indicate that these may not be "complete/reference" quality. How many…
Answer: Larger genome size than expected-please help
by
Istvan Albert
102k
Genome assembly is still a trial and error process, but getting 39 million genomes for a 34-million-long expectation is not too bad.
Oft…
Comment: Larger genome size than expected-please help
by
alexandrakortsi
•
0
Because it is a very common species and there are 15 available genomes around the size i mentioned. The problem is that they all have many …
Comment: Larger genome size than expected-please help
by
GenoMax
150k
> if these extra million bp are real (seems unlikely)
Why do you feel that way? Have you aligned your assembly to an available reference…
Comment: Find the reads which correspond to DP of vcf
by
totoroGirl
•
0
yes! I am running it now
but your second suggestion: samtools view in.bam "chrX:124068651-124068651" | cut -f1 will give me all the read…
Traffic: 1624 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6