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Don't ask me why but the spam bot got triggered and suspended you. I reinstated you, not sure why that happened.
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Another possibility could be that the other assemblies are older. Nanopore seq tech has become very useful of late and generates good and l…
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Thank you so much for your kind and clear explanation, this really helped clarify what I was unsure about!
I truly appreciate you taking th…
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> but I know vst is usually for RNA-seq
It's just a transformation that unlocks the variance from the mean, you can use it here with no pr…
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can you give any thought? (scale:0-2000)
![ (can you give any thought?][1]
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they recently released a version specific for long reads: [fastplong][1]
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So you mean you see peaks at Xist which makes you think it's activate X-inactivation, hence its female? Can you show some plots or anything?
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Yes, I have checked the signal on chrY data. The problem is that the sample have the peak signals for chrY in ATAC-seq data; however, it al…
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Have you considered contacting PacBio support? If they have any specific explanations please come back to this thread to add them here.
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Yes, I am referring to PacBio HiFi data (even though original question was about nanopore data)
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Thank you for the reference, I'll look into it.
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very strange. Can you please , upload the file below in a new issue : https://github.com/lindenb/jvarkit/issues
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Original question was about nanopore data. Are you referring to PacBio HiFi data?
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