updated 2 hours ago by
Jouni Sirén
▴
630
•
written 5 days ago by
zhengluo
•
0
0
votes
1
reply
234
views
0
votes
0
replies
48
views
10 hours ago by
雨
▴
20
835
votes
169
replies
172k
views
110 follow
updated 6 months ago by
Biostar
3.4k
•
written 8.3 years ago by
Istvan Albert
102k
0
votes
1
reply
151
views
updated 11 hours ago by
Rory Stark
★
2.1k
•
written 17 hours ago by
buffealo
▴
130
1
vote
8
replies
1.4k
views
6 follow
77
votes
30
replies
31k
views
18 follow
updated 16 hours ago by
Paulo
•
0
•
written 11.1 years ago by
Istvan Albert
102k
0
votes
4
replies
159
views
0
votes
0
replies
66
views
15 hours ago by
Franck
•
0
1
vote
4
replies
225
views
18 hours ago by
dk7258859
•
0
0
votes
8
replies
208
views
updated 10 hours ago by
Pierre Lindenbaum
165k
•
written 18 hours ago by
totoroGirl
•
0
4
votes
5
replies
161
views
0
votes
1
reply
124
views
updated 22 hours ago by
i.sudbery
21k
•
written 1 day ago by
Alana Conceição Maia Lessa
•
0
0
votes
1
reply
123
views
updated 22 hours ago by
colindaven
7.3k
•
written 1 day ago by
gulin
•
0
0
votes
5
replies
180
views
updated 19 hours ago by
GenoMax
150k
•
written 1 day ago by
paulanavarrete116
•
0
2
votes
2
replies
207
views
0
votes
0
replies
100
views
1 day ago by
kbranger
•
0
8
votes
12
replies
336
views
0
votes
3
replies
151
views
1
vote
2
replies
162
views
0
votes
2
replies
151
views
1
vote
1
reply
104
views
0
votes
4
replies
137
views
1
vote
5
replies
357
views
1
vote
1
reply
122
views
2
votes
2
replies
259
views
updated 30 minutes ago by
lieven.sterck
15k
•
written 4 days ago by
Jl
•
0
1
vote
3
replies
163
views
0
votes
1
reply
129
views
updated 1 day ago by
lieven.sterck
15k
•
written 1 day ago by
Naila
•
0
1
vote
4
replies
178
views
1 day ago by
SomeOne
▴
170
1
vote
7
replies
252
views
updated 1 day ago by
yura.grabovska
▴
750
•
written 1 day ago by
zhang616123
•
0
0
votes
3
replies
186
views
updated 1 day ago by
Bastien Hervé
6.2k
•
written 1 day ago by
Jonathan Yoou
▴
70
0
votes
0
replies
103
views
1 day ago by
soledad.esteban
•
0
0
votes
4
replies
182
views
1
vote
14
replies
512
views
updated 2 days ago by
colindaven
7.3k
•
written 2 days ago by
ZuelTech
•
0
1
vote
4
replies
1.1k
views
updated 2 days ago by
swbarnes2
14k
•
written 4 days ago by
Wu-Sheng Zhang
•
0
1
vote
4
replies
248
views
3
votes
8
replies
289
views
0
votes
1
reply
170
views
updated 2 days ago by
chrchang523
11k
•
written 2 days ago by
Smilesky
•
0
0
votes
0
replies
111
views
0
votes
0
replies
124
views
2 days ago by
Physalia-courses
★
2.6k
0
votes
2
replies
185
views
0
votes
0
replies
128
views
1
vote
0
replies
218
views
0
votes
2
replies
315
views
0
votes
0
replies
215
views
updated 4 days ago by
Pierre Lindenbaum
165k
•
written 4 days ago by
swarnadurga66666m
•
0
0
votes
1
reply
251
views
updated 4 days ago by
GenoMax
150k
•
written 4 days ago by
Yongjie Zhang
▴
110
0
votes
1
reply
257
views
updated 4 days ago by
Mensur Dlakic
★
29k
•
written 4 days ago by
Yongjie Zhang
▴
110
2
votes
3
replies
2.3k
views
updated 4 days ago by
Dan A
•
0
•
written 3.7 years ago by
Agenor Neto
▴
10
1
vote
1
reply
280
views
0
votes
2
replies
356
views
updated 5 days ago by
Istvan Albert
102k
•
written 5 days ago by
louis-gil
•
0
2
votes
1
reply
470
views
Recent Votes
Recent Locations •
All
India/Ahmedabad, 5 minutes ago
China, 6 minutes ago
Germany, 6 minutes ago
Netherlands, 10 minutes ago
Karolinska Institutet, Sweden, 10 minutes ago
Croatia, 11 minutes ago
Spain, 12 minutes ago
Recent Awards •
All
Scholar to
Jouni Sirén
▴
630
Popular Question to
雨
▴
20
Popular Question to
karlensberg
•
0
Popular Question to
buffealo
▴
130
Voter to
Maxime Garcia
▴
350
Popular Question to
A_heath
▴
170
Popular Question to
totoroGirl
•
0
Recent Replies
Comment: Checking sex of a sample with sequencing data
by
xqyn
▴
30
can you give any thought? (scale:0-2000)
![ (can you give any thought?][1]
[1]: /media/images/fa316655-e25e-46a6-adf6-15a5db66
Comment: FastQC on nanopore data: high proportion of polyA and polyG. Why ?
by
lieven.sterck
15k
they recently released a version specific for long reads: [fastplong][1]
[1]: https://github.com/OpenGene/fastplong
Comment: Checking sex of a sample with sequencing data
by
ATpoint
87k
So you mean you see peaks at Xist which makes you think it's activate X-inactivation, hence its female? Can you show some plots or anything?
Comment: Checking sex of a sample with sequencing data
by
xqyn
▴
30
Yes, I have checked the signal on chrY data. The problem is that the sample have the peak signals for chrY in ATAC-seq data; however, it al…
Answer: Question about `vg construct`
by
Jouni Sirén
▴
630
GBWT construction from a VCF expects that the paths representing variants are named by the hash of the variant rather than its identifier. …
Comment: FastQC on nanopore data: high proportion of polyA and polyG. Why ?
by
GenoMax
150k
Have you considered contacting PacBio support? If they have any specific explanations please come back to this thread to add them here.
Comment: FastQC on nanopore data: high proportion of polyA and polyG. Why ?
by
vkaz
•
0
Yes, I am referring to PacBio HiFi data (even though original question was about nanopore data)
Comment: Alternatives to UCSC genome browser for obtaining gene coordinates
by
shpak.max
▴
50
Thank you for the reference, I'll look into it.
Incidentally, among other issues, UCSC Table browser feature seems to be buggy - for about…
Comment: Find the reads which correspond to DP of vcf
by
Pierre Lindenbaum
165k
very strange. Can you please , upload the file below in a new issue : https://github.com/lindenb/jvarkit/issues
```
samtools view -h in.b…
Comment: FastQC on nanopore data: high proportion of polyA and polyG. Why ?
by
GenoMax
150k
Original question was about nanopore data. Are you referring to PacBio HiFi data?
Answer: DiffBind normalization error: invalid argument type (list) - cannot make it work
by
Rory Stark
★
2.1k
If your peaks are in `narrowPeak` format, it may help to set the `PeakCaller` to `"narrow"`.
Comment: FastQC on nanopore data: high proportion of polyA and polyG. Why ?
by
vkaz
•
0
@Matt -- Hi, did you figure out about the cause of poly-A spike in your reads? I have similar problem in genomic HiFi reads.
Comment: Find the reads which correspond to DP of vcf
by
totoroGirl
•
0
Okay so I used the command which you mentioned earlier, since I only want the reads which have a G to T substitution, I parsed the output s…
Comment: How To Separate Illumina Based Strand Specific Rna-Seq Alignments By Strand
by
Paulo
•
0
Hi Istvan!
This was exactly what I was looking for! Amazing how 11 years after, this post is still usefull and active :)
I have a que…
Traffic: 2990 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6