48 minutes ago by
Marcos
▴
10
0
votes
0
replies
10
views
0
votes
0
replies
20
views
Forum:
Optical Duplicates
2 hours ago by
ebogen
•
0
2
votes
1
reply
117
views
updated 3 hours ago by
Jeremy Leipzig
22k
•
written 11 hours ago by
barslmn
★
2.3k
0
votes
0
replies
42
views
4 hours ago by
marco.barr
▴
150
820
votes
169
replies
158k
views
110 follow
updated 7 weeks ago by
Biostar
3.0k
•
written 7.9 years ago by
Istvan Albert
101k
0
votes
0
replies
36
views
0
votes
0
replies
39
views
0
votes
0
replies
54
views
1
vote
2
replies
140
views
0
votes
0
replies
55
views
7 hours ago by
tyasird
▴
10
3
votes
8
replies
417
views
1
vote
3
replies
199
views
updated 6 hours ago by
GenoMax
146k
•
written 10 hours ago by
bitsofadventures
▴
40
3
votes
1
reply
183
views
4
votes
6
replies
287
views
0
votes
3
replies
426
views
15 hours ago by
elmira.yazdii
•
0
0
votes
0
replies
94
views
1
vote
6
replies
562
views
1
vote
2
replies
198
views
21 hours ago by
baibhu1234
•
0
0
votes
1
reply
146
views
updated 7 hours ago by
Ram
44k
•
written 22 hours ago by
sugamohanasundaram
•
0
0
votes
0
replies
124
views
0
votes
0
replies
117
views
0
votes
4
replies
208
views
1 day ago by
Haad
•
0
0
votes
0
replies
93
views
updated 1 day ago by
Ram
44k
•
written 1 day ago by
carlopecoraro2
★
2.6k
0
votes
1
reply
114
views
3
votes
4
replies
4.1k
views
updated 1 day ago by
Bastien Hervé
5.8k
•
written 11 months ago by
synat.keam
▴
100
1
vote
2
replies
178
views
2
votes
7
replies
714
views
updated 1 day ago by
GenoMax
146k
•
written 4 weeks ago by
tony_88888
•
0
0
votes
0
replies
94
views
4
votes
6
replies
384
views
0
votes
0
replies
102
views
1 day ago by
ayeraselvan
▴
10
0
votes
1
reply
130
views
1
vote
7
replies
279
views
0
votes
0
replies
104
views
0
votes
1
reply
153
views
0
votes
0
replies
113
views
updated 1 day ago by
Ram
44k
•
written 1 day ago by
pol.sole.navais
•
0
8
votes
17
replies
757
views
0
votes
7
replies
355
views
0
votes
0
replies
128
views
2 days ago by
UCSDBioSci
▴
30
0
votes
0
replies
134
views
2 days ago by
anasjamshed
▴
140
0
votes
1
reply
142
views
8
votes
9
replies
628
views
updated 7 hours ago by
Dave Carlson
★
1.9k
•
written 2 days ago by
kalavattam
▴
280
0
votes
1
reply
145
views
0
votes
0
replies
106
views
0
votes
2
replies
426
views
2
votes
7
replies
343
views
1
vote
4
replies
765
views
0
votes
0
replies
119
views
0
votes
0
replies
117
views
0
votes
0
replies
110
views
2 days ago by
Jiayi Yang
•
0
0
votes
1
reply
323
views
Recent Votes
Recent Locations •
All
United States, 2 minutes ago
United States, 4 minutes ago
Canada, 13 minutes ago
South Korea, 14 minutes ago
Brazil, 20 minutes ago
France/Nantes/Institut du Thorax - INSERM UMR1087, 23 minutes ago
United States, 27 minutes ago
Recent Awards •
All
Popular Question to
marco.barr
▴
150
Popular Question to
mk
▴
300
Popular Question to
Genotepes
▴
950
Popular Question to
A_heath
▴
170
Popular Question to
njornet
▴
20
Recent Replies
Comment: A notebook for checking relatedness and X heterozygosity from sequencing data
by
Jeremy Leipzig
22k
What would this return for individuals with Klinefelter syndrome i.e. XXY?
Comment: Extract gene_id and protein_id from .gtf file to create a list with them
by
Eduardo Oñate
•
0
Thanks! I resolve it using a different command line and sublime text to edit the text.
I use this command line:
grep -w 'CDS' GCF_0030862…
Comment: Extract gene_id and protein_id from .gtf file to create a list with them
by
GenoMax
146k
You can use `AGAT` toolkit to do this properly: https://agat.readthedocs.io/en/latest/tools/agat_sp_extract_attributes.html
Comment: I Built a Simple Website to Help Researchers find Research Grants
by
GenoMax
146k
Perhaps this tool is meant to be for non-US locations. NIH makes grant database available for similar purpose here: https://report.nih.gov/
Comment: Is a SLURM job array submission suitable for parallelizing multiple FASTQ file d
by
Dave Carlson
★
1.9k
I actually more-or-less agree with you. I suspect that the next HPC system we set up will probably go from an "opt-in" to "opt-out" approa…
Comment: Genetic modification in mosquito sequence
by
Ram
44k
Please read: https://www.biostars.org/p/75548/ and modify your post so your problem is clear and your post is readable.
Comment: Combining two closely related bacterial annotated genomes to analyze as one pool
by
i.sudbery
20k
I talked to someone who does this sort of thing in GroupA, and they said that sometimes the strains are close enough that you can use somet…
Comment: Is a SLURM job array submission suitable for parallelizing multiple FASTQ file d
by
kalavattam
▴
280
This seems like an appropriate answer, along with the comment below. If you’d prefer to add this as a comment instead of a reply, I’d be ha…
Comment: Is a SLURM job array submission suitable for parallelizing multiple FASTQ file d
by
dariober
15k
> This setup just assumes that most jobs are highly parallel and will be using the full set of resources of one or more nodes.
Fair enough…
Answer: Indexing a 2.6GB Plant Genome Using STAR (genomeGenerate Mode) Terminated Due to
by
colindaven
6.8k
If you have 3million contigs it is not going to be possible to use STAR or any other aligner, it is just too fragmented. I once had a plant…
Comment: I Built a Simple Website to Help Researchers find Research Grants
by
bitsofadventures
▴
40
Thank you for the feedback! The tool is still a work in progress. Right now, it identifies funding sources frequently cited in papers with …
Comment: Basic de novo assembly of plant genome
by
Lemonhope
▴
10
Hey, Lemonhope here.
So maybe I was unclear in my original post, sorry, it was a bit late when I posted! My goal is to simply have a set …
Comment: Basic de novo assembly of plant genome
by
Lemonhope
▴
10
Hey
So maybe I was unclear, sorry, it was a bit late when I posted! My goal is to simply have a set of scaffolds that could be used for b…
Comment: Basic de novo assembly of plant genome
by
Lemonhope
▴
10
I do have an idea of the genome size yes, but I am unaware of whether the species is able to self or not.
Thank you for the recommendatio…
Traffic: 1163 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6