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120,895 results • Page
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Extract length of sample sequence from vcf
microsatellites
bcftools
vcf
indels
variants
just now by
jahnreinhard.ringger
• 0
0
votes
1
reply
13
views
Choosing the best clustering method for a certain methylation data
DMR
k-means
hierarchical
clustering
methylation
updated 23 minutes ago by
yura.grabovska
▴ 750 • written 32 minutes ago by
Sophia
• 0
0
votes
2
replies
51
views
How to get into research for an absolute beginners
research
updated 42 minutes ago by
Joe
22k • written 2 hours ago by
jpeduprep
• 0
0
votes
0
replies
19
views
News:
Online course — Comparative Genomics — 7–11 April
SNVs
ComparativeGenomics
SVs
GenomeAnnotation
2 hours ago by
Physalia-courses
★ 2.6k
0
votes
8
replies
104
views
MultiQC_report
content_multiqc_fastqc
Quality_control_
Adapter
updated 1 hour ago by
GenoMax
150k • written 3 hours ago by
AIMAR
• 0
0
votes
1
reply
42
views
how to do a corellation analysis of multiple CRISPR data sets
batch-effect.
crispr
screen
correlation
updated 3 hours ago by
dthorbur
★ 2.9k • written 4 hours ago by
Assa Yeroslaviz
★ 1.9k
8
votes
4
replies
311
views
Alternatives to UCSC genome browser for obtaining gene coordinates
browser
ucsc
updated 8 hours ago by
LauferVA
4.6k • written 2 days ago by
shpak.max
▴ 60
0
votes
8
replies
236
views
Tool:
Introducing Grantease: Go From RFA to First Draft Grant Proposal in 15 Minutes
ai
biology
grants
nih
litreview
updated 13 hours ago by
GenoMax
150k • written 15 hours ago by
Will
• 0
0
votes
0
replies
70
views
Job:
Postdoctoral Position in Computational Protein Design and Molecular Modelling
opportunity
postdoc
13 hours ago by
Sophie
• 0
835
votes
169
replies
172k
views
110 follow
News:
The Biostar Handbook. A bioinformatics e-book for beginners.
training
handbook
updated 6 months ago by
Biostar
3.4k • written 8.3 years ago by
Istvan Albert
102k
0
votes
1
reply
104
views
Modify read groups in BAM file
samtools
BAM
picard
DRAGEN
updated 17 hours ago by
Istvan Albert
102k • written 18 hours ago by
Alex
• 0
0
votes
1
reply
103
views
How to put distinct colors to connection bridges in the Sankey plot ?
R
Python
Sankey
updated 4 hours ago by
zx8754
12k • written 20 hours ago by
ohtang7
▴ 40
0
votes
0
replies
76
views
PCA comparison of cell line vs tumors
RNAseq
Sequencing
PCA
Normalization
21 hours ago by
karlensberg
• 0
0
votes
9
replies
344
views
Find the reads which correspond to DP of vcf
bam
variant
vcf
sam2tsv
updated 21 hours ago by
Pierre Lindenbaum
165k • written 1 day ago by
totoroGirl
• 0
1
vote
1
reply
143
views
cibersortx error - $ operator is invalid for atomic vectors
cibersortx
22 hours ago by
Franck
• 0
0
votes
0
replies
68
views
Need help defining a threshold
DAVID
Genes
GO
22 hours ago by
Ana
• 0
3
votes
9
replies
381
views
Larger genome size than expected-please help
genome
nanopore
size
minimap2
updated 5 hours ago by
colindaven
7.3k • written 1 day ago by
alexandrakortsi
• 0
5
votes
4
replies
198
views
PCA plots in ATAC-seq replicates: Is it okay to use vst transformed data for visualization?
ATAC-seq
diffbind
updated 1 day ago by
ATpoint
87k • written 1 day ago by
maplewj
▴ 20
0
votes
1
reply
301
views
Question about `vg construct`
vg
updated 1 day ago by
Jouni Sirén
▴ 630 • written 6 days ago by
zhengluo
• 0
0
votes
0
replies
89
views
How can I use mcmcglmm to calculate whether two traits are correlated?
glmm
statistics
evolution
1 day ago by
雨
▴ 20
0
votes
2
replies
294
views
DiffBind normalization error: invalid argument type (list) - cannot make it work, everything seems correct
normalization
deseq2
chipseq
diffbind
20 hours ago by
buffealo
▴ 130
1
vote
8
replies
1.5k
views
6 follow
FastQC on nanopore data: high proportion of polyA and polyG. Why ?
fastQC
polyG
ONT
nanopore
polyA
updated 1 day ago by
lieven.sterck
15k • written 12 months ago by
Matt
• 0
78
votes
31
replies
31k
views
18 follow
Tutorial:
How To Separate Illumina Based Strand Specific Rna-Seq Alignments By Strand
RNA-seq
1 day ago by
Istvan Albert
102k
1
vote
4
replies
285
views
News:
Wolfram tech for bio data analysis
plots
statistics
databases
ai
1 day ago by
dk7258859
• 0
4
votes
5
replies
238
views
Facing issue with output of nextflow pipeline
output
nextflow
fastqc
issue
updated 1 day ago by
colindaven
7.3k • written 1 day ago by
harsh
▴ 20
0
votes
1
reply
176
views
MULTIQC for miRNAseq data
multiqc
updated 2 days ago by
i.sudbery
21k • written 2 days ago by
Alana Conceição Maia Lessa
• 0
0
votes
1
reply
186
views
How to improve the mapping rate of vg giraffe
vg
updated 2 days ago by
colindaven
7.3k • written 2 days ago by
gulin
• 0
0
votes
5
replies
258
views
miRNA-seq normalization
miRDeep2
normalization
RNA-seq
miRNA-seq
miRNA
updated 1 day ago by
GenoMax
150k • written 2 days ago by
paulanavarrete116
• 0
2
votes
2
replies
258
views
Issues with vg surject into paths
vg
updated 2 days ago by
GenoMax
150k • written 3 days ago by
Rugare
• 0
0
votes
0
replies
141
views
Missing short indels from vcf
bcftools
shortindels
mpileup
2 days ago by
kbranger
• 0
8
votes
12
replies
406
views
Batch correction RNA-seq analysis
rna-seq
ComBat-seq
batch
correction
updated 2 days ago by
LauferVA
4.6k • written 2 days ago by
ka132
▴ 10
0
votes
3
replies
199
views
bbduk.sh trimming to BAM output file
bbduk.sh
updated 2 days ago by
GenoMax
150k • written 2 days ago by
bge
• 0
0
votes
2
replies
203
views
DEG analysys using pseudobulk from single cell RNA-seq
DEG
scRNA-seq
2 days ago by
Diego
▴ 110
1
vote
1
reply
146
views
Microarray platform probrID to Circ-ID problem
CircRNA
microarray
updated 2 days ago by
GenoMax
150k • written 2 days ago by
ParastooA
▴ 20
0
votes
4
replies
237
views
Checking sex of a sample with sequencing data
ATAC-seq
1 day ago by
xqyn
▴ 30
1
vote
5
replies
429
views
Depth in Cram file does not match depth in VCF file
IGV
of
Depth
SNV
coverage
updated 2 days ago by
Istvan Albert
102k • written 4 days ago by
shu8
• 0
1
vote
1
reply
166
views
Tools for clustering genes rather than samples for bulk RNA-seq
time
Bulk
RNA-seq
course
clustering
updated 2 days ago by
i.sudbery
21k • written 2 days ago by
ATS
• 0
2
votes
2
replies
321
views
what database should I use for de novo genome in AUGUSTUS
genome
AUGUSTUS
galaxy
annotation
updated 1 day ago by
lieven.sterck
15k • written 5 days ago by
Jl
• 0
1
vote
5
replies
232
views
Is there a tool to obtain GO terms for thousands of genes at once?
permutations
Genes
updated 10 minutes ago by
Istvan Albert
102k • written 2 days ago by
Ana
• 0
0
votes
1
reply
174
views
cant make the correct matrix
logfc
csv
updated 2 days ago by
lieven.sterck
15k • written 2 days ago by
Naila
• 0
1
vote
4
replies
234
views
FIxing Gene Models in Funannotate
genomics
funannotate
fungus
annotation
2 days ago by
SomeOne
▴ 170
1
vote
7
replies
324
views
How to Make Cell Order identical Between Two Seurat Objects in R?
R
seurat
scRNA-seq
updated 2 days ago by
yura.grabovska
▴ 750 • written 3 days ago by
zhang616123
• 0
0
votes
3
replies
234
views
Assign different color in same section of Chord diagram in R
Chart
R
Diagram
Plot
Chord
updated 2 days ago by
Bastien Hervé
6.2k • written 3 days ago by
Jonathan Yoou
▴ 70
0
votes
0
replies
141
views
News:
Live Online course: Introduction to Python, April, 2025
python
programming
course
3 days ago by
soledad.esteban
• 0
0
votes
4
replies
244
views
Niormalization process in creating heatmap
Z
heatmap
score
Normalization
updated 3 days ago by
ATpoint
87k • written 3 days ago by
ZuelTech
• 0
1
vote
14
replies
624
views
Lacking exons in gtf file of a virus' genome
gtf
exon
Mapping
Hazara
VirusGenome
updated 3 days ago by
colindaven
7.3k • written 4 days ago by
ZuelTech
• 0
1
vote
4
replies
1.4k
views
Should I process two complete sets of 10x single-cell multiomics sequencing files from one donor together or separately?
10x_multiome
ENCODE
cellranger_arc
updated 3 days ago by
swbarnes2
14k • written 5 days ago by
Wu-Sheng Zhang
• 0
1
vote
4
replies
312
views
Count matrices plotting
count
matrix
scanpy
3 days ago by
NIkita
• 0
3
votes
8
replies
355
views
Filter snRNA-seq .fastq files based on barcodes
snRNA-seq
scRNA-seq
FASTQ
bbmap
updated 2 days ago by
GenoMax
150k • written 3 days ago by
connorjfausto
▴ 30
0
votes
1
reply
223
views
Defining Sex Chromosomes in PLINK for a Camel Genome
plink
vcf
updated 3 days ago by
chrchang523
11k • written 3 days ago by
Smilesky
• 0
120,895 results • Page
1 of 2418
Recent Votes
Answer: Alternatives to UCSC genome browser for obtaining gene coordinates
Comment: PCA plots in ATAC-seq replicates: Is it okay to use vst transformed data for vis
Comment: PCA plots in ATAC-seq replicates: Is it okay to use vst transformed data for vis
Answer: PCA plots in ATAC-seq replicates: Is it okay to use vst transformed data for vis
Answer: Alternatives to UCSC genome browser for obtaining gene coordinates
Answer: Alternatives to UCSC genome browser for obtaining gene coordinates
Alternatives to UCSC genome browser for obtaining gene coordinates
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Recent Replies
Comment: Is there a tool to obtain GO terms for thousands of genes at once?
by
Istvan Albert
102k
The tool draws all ancestors for a term. I would say that, in general, it would be hard to avoid drawing common terms. Because they will st…
Comment: Shotgun dataset with polyG, low qualiity
by
shevch2009
• 0
Hi, Not really. Semibin gave me 100 bins, but they are all low quality, Commebin not working, trying to figure out why...
Answer: Choosing the best clustering method for a certain methylation data
by
yura.grabovska
▴ 750
Something like ConsensusClusterPlus will allow you to assess cluster stability directly via the report it produces. Smiliar for something l…
Comment: How to get into research for an absolute beginners
by
Joe
22k
Step 1 is decide on a question you want to answer/believe needs to be answered (your topic). If you are doing this as a researcher in a Un…
Comment: MultiQC_report
by
GenoMax
150k
> I only have 100 samples in the other control parameters in the multiqc report. Can you post screenshots of where you see the discrepanc…
Comment: MultiQC_report
by
lieven.sterck
15k
I see. You can always contact the tool developers: https://github.com/MultiQC/MultiQC if you do and get a satisfying answer, can we as to…
Comment: How to get into research for an absolute beginners
by
lieven.sterck
15k
What are your reasons to start in (bioinfo) research? If you can line-up your personal interests in this field, you likely already have a…
Comment: MultiQC_report
by
AIMAR
• 0
Exactly. I tried to run the analysis only on the files obtained by fastqc (reports.html) but no results from multiqc. So I took the zip fil…
Comment: Is there a tool to obtain GO terms for thousands of genes at once?
by
Ana
• 0
Do you know whether there is a way to filter the GO terms based on the number of mapped genes they have? I am interested only in GO terms t…
Comment: MultiQC_report
by
lieven.sterck
15k
ok, makes sense. I was on the right track though ... :) does it not included other fastqc reports it found? perhaps there are subdirs or …
Comment: MultiQC_report
by
AIMAR
• 0
I have 50 samples with paired-end data, which gives me 100 (50x2=r1+r2). So I have one fastqc report per read (100 reports). But I can't un…
Comment: MultiQC_report
by
lieven.sterck
15k
not 100% familiar with the mutliQC details but is it possible that it gets a fastqc report per read? So for paired-end reads you will get t…
Comment: MultiQC_report
by
AIMAR
• 0
My input data are DNA reads paired-end obtained from illumina.
Comment: MultiQC_report
by
lieven.sterck
15k
what was your input data?
Comment: how to do a corellation analysis of multiple CRISPR data sets
by
dthorbur
★ 2.9k
Please provide more details. The structure of your dataset is unknown, and currently sounds like it may be asymmetrical if only some condit…
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