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119,597 results • Page
3 of 2392
Sort: Rank
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Votes
Replies
0
votes
0
replies
166
views
AAI matrix with compareM
AAI
matrix
6 days ago by
anna
• 0
6
votes
13
replies
4.9k
views
11 follow
ADMIXTURE Segmentatio fault
admixture
plink
vcf
updated 6 days ago by
janneke.aylward
▴ 20 • written 3.5 years ago by
pmc.sa
▴ 40
2
votes
5
replies
411
views
Handling Negative Values in Log-Transformed a Dataset for Differential Expression Analysis with Limma
microarray
updated 1 day ago by
Gordon Smyth
★ 7.6k • written 7 days ago by
Maryam
• 0
2
votes
3
replies
393
views
Full length 18S rRNA data from Nanopre
Linux
updated 6 days ago by
1769mkc
★ 1.2k • written 7 days ago by
Adyasha
• 0
8
votes
3
replies
442
views
What's going on with Ensembl?
biomaRt
ensembl
updated 6 days ago by
Louisse_Ensembl
▴ 170 • written 23 days ago by
yura.grabovska
▴ 660
2
votes
4
replies
716
views
Error in biomaRt useMart and useDataset accessing ovis aries genome
biomaRt
updated 6 days ago by
Louisse_Ensembl
▴ 170 • written 28 days ago by
Michael
• 0
0
votes
3
replies
367
views
PCA Plotting Differences Before and After Batch Correction in RNA-seq for Meta-Analysis
batch
RNA-seq
correction
PCA
updated 6 days ago by
Basti
★ 2.0k • written 8 days ago by
Nelo
▴ 20
1
vote
2
replies
326
views
How to install deconstructSigs in R
R
updated 7 days ago by
ATpoint
85k • written 8 days ago by
Zhenyu Zhang
★ 1.2k
0
votes
1
reply
406
views
Is there a function in cytoscape for calculating node strength ?
network
cytoscape
igraph
updated 7 days ago by
Scooter
▴ 280 • written 14 days ago by
SplitInf
▴ 20
0
votes
1
reply
237
views
CRISpick github/downloadable local copy
CRISPR
CRISPRai
CRISpicj
updated 7 days ago by
GenoMax
147k • written 7 days ago by
noodle
▴ 590
1
vote
0
replies
422
views
How to create a signature matrix, using scRNA-seq data, for downstream CIBERSORTx deconvolution of bulk data when the data is too heavy?
CIBERSORTx
deconvolution
Seurat
scRNA-seq
bulkRNA-seq
7 days ago by
Fossil
▴ 30
0
votes
0
replies
187
views
Single-Cell RNA Sequencing: Find Tissue with Highest Sox1 Expression
RNA-Seq
7 days ago by
Koki
• 0
2
votes
2
replies
521
views
Method to detect CNV in a large set of coverage profile ?
bam
cnv
coverage
machine-learning
updated 7 days ago by
jared.andrews07
★ 18k • written 7 days ago by
Pierre Lindenbaum
164k
1
vote
0
replies
228
views
Blog:
How to create Sunburst plot using echarts4r R package or sunburstR package for categorical data of Dengue
echarts4R
sunburstR
7 days ago by
rohitsatyam102
▴ 920
1
vote
0
replies
176
views
How to create scoring file with LDpred2?
PGS
Scoring
LDpred2
Beta
7 days ago by
d0gs_
▴ 10
6
votes
7
replies
395
views
Changing label geom_text in ggplot
ggplot
7 days ago by
Bine
▴ 90
1
vote
2
replies
282
views
gWidgets2RGtk2 problem for newer versions of R
data-science
gWidgets2RGtk2
rstudio
r
updated 7 days ago by
tothepoint
▴ 940 • written 7 days ago by
burak
• 0
1
vote
2
replies
325
views
spatial transcriptomic and protemomic
spatial
transcriptomic
5 days ago by
Synat
• 0
0
votes
0
replies
238
views
Job:
Bioinformatician at Max Planck Institute for plant breeding research (Cologne, Germany)
bioinformatician
MPIPZ
opening
7 days ago by
microfuge
★ 1.9k
4
votes
2
replies
406
views
Job:
Experienced Bioinformatician Seeking Opportunities in NGS Data Analysis and Pipeline Development
Pipeline-Development
NGS
Genomics
Transcriptomics
Data-Analysis
7 days ago by
Bernard
▴ 30
0
votes
1
reply
254
views
Best Differential Abundance Tool for Microbiome Studies and Ensuring Cross-Study Comparability
abundance
differential
7 days ago by
benkosta
• 0
1
vote
2
replies
457
views
Job:
finding jobs in bioinformatics
jobs
searching
8 days ago by
Sam
• 0
2
votes
1
reply
330
views
Visualize and annotate protein domains within a genomic context, given complement
complement
protein
genomics
updated 4 days ago by
cmdcolin
★ 4.0k • written 8 days ago by
Madde
▴ 20
0
votes
6
replies
481
views
[ChIPSeq] Multiple Peaks at Cross Correlation Analysis
phantompeakqualtools
chipseq
crosscorrelation
encode
6 days ago by
Diren
• 0
2
votes
4
replies
471
views
Batch correction
RNA-seq
8 days ago by
Sakura
• 0
2
votes
3
replies
540
views
Pre-pseudoalignment preprocessing
salmon
updated 8 days ago by
dsull
★ 6.9k • written 16 days ago by
Nicholas
• 0
0
votes
4
replies
302
views
PCA in two similar conditions
RNA-seq
PCA
updated 7 days ago by
jared.andrews07
★ 18k • written 8 days ago by
Meghan.T
• 0
5
votes
1
reply
257
views
[RNASeq] Excluding samples that cluster differently in PCA plot
PCA
rnaseq
updated 8 days ago by
LChart
4.5k • written 8 days ago by
Texx
▴ 20
0
votes
2
replies
382
views
TCGA Methylation Beta and Gene Expression Help
ensembl
expression
hgnc
gene-names
methylation
updated 8 days ago by
yura.grabovska
▴ 660 • written 7 weeks ago by
zhenjie.chin88
• 0
0
votes
3
replies
226
views
Would this level of base pair mismatch suggest the data is inaccurate?
accuracy
data
base-pair
mismatch
alignment
updated 8 days ago by
GenoMax
147k • written 8 days ago by
Lou11
• 0
0
votes
7
replies
485
views
BCFTOOLS: command does not work correctly. Can you help me?
bcftools
7 days ago by
jhonatan.henrique
• 0
0
votes
0
replies
182
views
Data sets for prostate/cervical cancer
cancer
datasets
databases
4 days ago by
M__
▴ 200
0
votes
4
replies
247
views
Rapid BaseQ drop in adaptor regions with UMI
adapter
fastqc
umi
adaptor
updated 8 days ago by
i.sudbery
20k • written 8 days ago by
geneticatt
▴ 140
0
votes
0
replies
286
views
Requesting help with Edge Weighted Graph Creation (Cytoscape)
Cytoscape
WGCNA
8 days ago by
Guntaas
• 0
0
votes
2
replies
1.1k
views
RANGER-DTL ERROR: missing ')' in input tree expression line x column xx
RANGER
RANGER-DTL
fasttree
updated 8 days ago by
philipgdv
• 0 • written 3.4 years ago by
seok1213neo
▴ 40
0
votes
0
replies
129
views
Amplifying more then 6 subpools in an oligopool
wet-lab
8 days ago by
gernophil
▴ 90
0
votes
5
replies
260
views
PCR Primer Design
PCR
Primer
updated 8 days ago by
Ram
44k • written 8 days ago by
ebaduareb001
• 0
0
votes
2
replies
225
views
Remove reference sequence from multifasta file
fasta
multifasta
updated 8 days ago by
lieven.sterck
15k • written 8 days ago by
FJCF
• 0
0
votes
2
replies
668
views
Using Tumor Immune Dysfunction and Exclusion (TIDE)
TPM
cancer
r
8 days ago by
JACKY
▴ 160
4
votes
7
replies
366
views
Currently recommended Oxford Nanopore data basecalling and preprocessing pipeline for de novo assembly applications
ONT
assembly
Nanopore
preprocessing
basecalling
8 days ago by
Denis
▴ 310
0
votes
2
replies
188
views
GPU facility for single cell multi omics data analysis
multiomics
google-colab
gpu
single-cell
8 days ago by
KABILAN
▴ 100
0
votes
0
replies
125
views
Somatic-Sniper calls very few variants
sniper
somatic
8 days ago by
runfreely2
• 0
0
votes
2
replies
185
views
Overlap entries in annotation
Bedtools
updated 8 days ago by
Dunois
★ 2.8k • written 8 days ago by
Muhammad
• 0
3
votes
2
replies
274
views
Request for Bioinformatics Workstation Configuration for Bacterial Whole Genome Analysis?
Bacterial
Workstation
Whole
genome
AMR
updated 7 days ago by
Dunois
★ 2.8k • written 8 days ago by
mathavanbioinfo
▴ 80
0
votes
0
replies
111
views
Is there a database with the mode of inheritance for diseases?
diagnostics
genotyping
allelotyping
9 days ago by
njornet
▴ 20
0
votes
0
replies
120
views
Datasets with RNA-seq and drug sensitivity data
drug
datasets
sra
RNA-seq
sensitivity
9 days ago by
octpus616
▴ 120
0
votes
0
replies
336
views
Is it possible to convert the Hazard ratio from cox proportional hazard model into a survival function to estimate survival probability?
MachineLearning
HazardRatio
Cox
SurvivalAnalysis
SurvivalFunction
9 days ago by
Yugan Gogul Muthukumar
▴ 10
3
votes
2
replies
297
views
Is there any information about the reads duplication rate and sequencing reads length?
cfDNA
sequencing
readduplication
8 days ago by
Zeng Jingyu
▴ 80
0
votes
0
replies
97
views
Transcript_id with "-0" after "flair collapse"
flair
9 days ago by
anna_shin
• 0
0
votes
1
reply
276
views
HOMER annotateInteractions.pl error
annotateInteractions.pl
HOMER
updated 9 days ago by
JJJelly
• 0 • written 4 weeks ago by
anushkachaturvedi099
• 0
119,597 results • Page
3 of 2392
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Answer: making estimated proteome from genome
by
colindaven
7.0k
You can install augustus through bioconda. https://bioconda.github.io/recipes/augustus/README.html#package-augustus Also please tell use…
Comment: Can anyone help me with this script error?
by
aUser
▴ 60
Which version you are using? As per the documentation, the authors change the API, so you need different command; e.g: ```r gsvaParam( exp…
Comment: IGV: first bases of each chromosomes missing when loading genome file
by
Pierre
• 0
I have the same issue with Unix and MacOS line endings. With Windows line endings it's even worst. When I change the names of the chrom…
Answer: making estimated proteome from genome
by
Mensur Dlakic
★ 28k
Prodigal is for prokaryotic gene prediction. > I attempted to make a blast database with makeblastdb, but it seems to have failed, as t…
Answer: Plotting Gene Ontology analysis results and questions about Fold Enrichment and
by
Lachlan
• 0
In case anyone is coming to this thread here is a great package to generate this kind of data https://wencke.github.io/. These kinds of pl…
Comment: metaspades error
by
pranjalarun10
• 0
Trimming was done independently for both R1 and R2 files i.e., with trimming option of trimming base pair less than 35 bp and Q less than 30
Comment: The BUSCO assessment of the MAKER annotation results shows a low completeness
by
mut
• 0
I used the BUSCO embryophyta_odb10 database and Maker v3.01.03
Comment: making estimated proteome from genome
by
GenoMax
147k
> The only thing that I can think of is to use prodigal on each of the 2099 individual contigs, and then combine them later. If it works t…
Comment: Demultiplexing inDrop dataset
by
jade
• 0
Hello, The page "https://iccb.med.harvard.edu/files/iccb/files/sequencing_indrops_libraries_02_28_18.pdf" cannot be found. Could you please…
Comment: Combine GBS and WGS data for variant calling in GWAS analysis
by
behnam
▴ 10
Thanks for your comment. I think in your comment, you mean we should analyze the parents and population separately, then combine the cover…
Comment: How to include the lane index in STARsolo count matrix barcodes.tsv?
by
swbarnes2
14k
Why do you want to do this? Does Illumina even make instruments anymore where you can have one sample in one lane, and a different sample …
Comment: Seurat - unordered cells
by
solo.albif
• 0
I started my analysis with a single Seurat object and used `SplitObject(object, split.by = "ident")` to split by Patient ID. The problem wi…
Comment: How to include the lane index in STARsolo count matrix barcodes.tsv?
by
mk
▴ 300
thanks, so how do i make starsolo report the NNNNNNNN-i index of the gem well for barcode NNNNNNNN?
Answer: How to include the lane index in STARsolo count matrix barcodes.tsv?
by
swbarnes2
14k
If you combine two samples together, the -1 and -2 at the end of cell barcodes will matter, so you know what cells came from what samples, …
Answer: miloR - object 'as.SimpleList' of mode 'function' was not found when running cal
by
michael.morgan
• 0
FYI - this didn't get tagged as miloR, so it didn't come up on my radar. First thing is, hopefully you aren't still having a problem. Se…
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