0
votes
1
reply
308
views
0
votes
1
reply
49
views
0
votes
0
replies
39
views
0
votes
0
replies
54
views
9 hours ago by
ATRX
★
1.2k
1
vote
0
replies
42
views
10 hours ago by
geneontologyhelp
▴
450
835
votes
169
replies
170k
views
110 follow
updated 5 months ago by
Biostar
3.4k
•
written 8.3 years ago by
Istvan Albert
102k
0
votes
0
replies
59
views
2
votes
1
reply
153
views
updated 13 hours ago by
grover.sandeep
▴
20
•
written 2 days ago by
s.may-wilson
▴
50
0
votes
0
replies
61
views
1
vote
2
replies
109
views
0
votes
1
reply
109
views
updated 15 hours ago by
Michael
55k
•
written 19 hours ago by
frarodmar17
•
0
0
votes
0
replies
73
views
0
votes
4
replies
314
views
updated 12 hours ago by
jared.andrews07
★
18k
•
written 3 days ago by
Pumla
•
0
9
votes
21
replies
7.6k
views
12 follow
updated 20 hours ago by
bagdevi.mishra
▴
110
•
written 6 months ago by
Martina
•
0
0
votes
2
replies
137
views
0
votes
0
replies
91
views
1 day ago by
cedric.blais
▴
20
0
votes
0
replies
79
views
0
votes
0
replies
78
views
1 day ago by
soledad.esteban
•
0
6
votes
6
replies
479
views
1 day ago by
noodlejackson
▴
40
10
votes
2
replies
223
views
1
vote
1
reply
177
views
3
votes
7
replies
233
views
updated 13 hours ago by
colindaven
7.3k
•
written 1 day ago by
Meghan.T
•
0
0
votes
3
replies
216
views
updated 13 hours ago by
Arup Ghosh
3.3k
•
written 1 day ago by
mimijane1664
•
0
1
vote
4
replies
217
views
updated 1 day ago by
Jeremy Leipzig
23k
•
written 1 day ago by
lidia.manczak
•
0
1
vote
8
replies
212
views
updated 1 day ago by
Ram
45k
•
written 1 day ago by
Palanikumar.Palanichamy
•
0
0
votes
3
replies
185
views
updated 1 day ago by
GenoMax
149k
•
written 1 day ago by
lingjun meng
▴
20
2
votes
3
replies
200
views
2
votes
7
replies
1.3k
views
3
votes
3
replies
245
views
updated 2 days ago by
vkkodali_ncbi
★
3.8k
•
written 2 days ago by
诗友
•
0
2
votes
2
replies
659
views
0
votes
0
replies
111
views
0
votes
2
replies
196
views
0
votes
1
reply
194
views
updated 2 days ago by
Bastien Hervé
6.1k
•
written 2 days ago by
Deepak Tanwar
★
4.2k
1
vote
1
reply
214
views
5
votes
3
replies
270
views
2
votes
2
replies
329
views
2
votes
6
replies
349
views
updated 2 days ago by
lieven.sterck
15k
•
written 2 days ago by
JieQY
•
0
0
votes
2
replies
202
views
3
votes
3
replies
507
views
1
vote
4
replies
543
views
1 day ago by
disha3786
•
0
3
votes
4
replies
342
views
updated 2 days ago by
ChanderKant (CK) Chaudhary
▴
10
•
written 4 days ago by
chandimaa
•
0
2
votes
6
replies
401
views
updated 2 days ago by
jared.andrews07
★
18k
•
written 3 days ago by
Lu Adr
•
0
0
votes
0
replies
161
views
0
votes
1
reply
230
views
updated 3 days ago by
GenoMax
149k
•
written 3 days ago by
maritza.garcia-saavedra
•
0
0
votes
1
reply
211
views
updated 3 days ago by
GenoMax
149k
•
written 3 days ago by
maritza.garcia-saavedra
•
0
35
votes
14
replies
1.3k
views
12 follow
written 6 weeks ago by
sviatoslav.kendall
▴
960
0
votes
0
replies
358
views
1
vote
1
reply
208
views
0
votes
0
replies
173
views
3 days ago by
baibhu1234
▴
20
0
votes
0
replies
161
views
3 days ago by
BIANCA
•
0
Recent Votes
Recent Locations •
All
China, 2 minutes ago
India, 7 minutes ago
United States, 7 minutes ago
United States, 23 minutes ago
United States, 28 minutes ago
Saudi Arabia, 1 hour ago
United States, 1 hour ago
Recent Awards •
All
Popular Question to
jkim
▴
190
Popular Question to
Begonia_pavonina
▴
210
Teacher to
Mensur Dlakic
★
29k
Popular Question to
cmdcolin
★
4.2k
Popular Question to
from the mountains
▴
250
Popular Question to
pablo
▴
330
Popular Question to
Leite
★
1.3k
Recent Replies
Comment: Parsing BAM file per cell from Smart-Seq2 dataset
by
GenoMax
149k
Based on your use of UMI's you appear to have smartseq v.3 data.
Since this is single cell data I don't know if plain `STAR` is appropria…
Answer: Interactive UMAP for scRNA-seq Data
by
S
•
0
Hi,
I found a great package called [ShinyCell][1] which makes interactive UMAP and many other interactive plots. It's super easy to setu…
Comment: Where Is The Experimental Rna Structure Data?
by
Wayne
★
2.1k
Related 2025 pre-print: ['NucleoSeeker: Precision Filtering of RNA Databases to Curate High-Quality Datasets'](https://www.biorxiv.org/cont…
Comment: GERP Score for variants
by
Begonia_pavonina
▴
210
It seems that the link http://mendel.stanford.edu/SidowLab/downloads/gerp/ is dead now. Would anyone know if it is temporary of definitive?…
Comment: Help with CIBERSORTx Error in Single-Cell RNA-seq Analysis: Invalid 'times' Argu
by
jared.andrews07
★
18k
Well, the issue is what it says. You're saying your reference data is single cell, but there's only a single cell for each cell type. It ex…
Answer: How to clarify results from an HLA association analysis - Omnibus tests/HATK/oth
by
grover.sandeep
▴
20
https://pubmed.ncbi.nlm.nih.gov/37495751/
You can reach me.
Sandeep Grover
Comment: enrichGo problem
by
Arup Ghosh
3.3k
Can you share some of the gene names from the `genes` vector?
Comment: nanopore variant calling
by
colindaven
7.3k
You'll get massive coverage for just one gene (maybe 2000+ depending on how long you run the minion for), so you could consider multiple ge…
Comment: Reasoning - Why is it invalid to compare ratios of TPMs?
by
ATpoint
87k
I can only speak for myself, but I have never looked at gene ratios, nor do I see its usecase.
Comment: Alignment algorithm for DNA sequencing
by
ATpoint
87k
> some alignment of DNA sequencing
This is not an adequate description of what you achieve to do. Please say why common tools, such as the…
Comment: Alignment algorithm for DNA sequencing
by
GenoMax
149k
You can use `bbmap` with the `local=t` option if you need local alignments. `bowtie v.1.x` does ungapped alignments.
Answer: RepeatMasker UCSC track
by
Michael
55k
> These sequences are located in different regions of the genome and they have different lengths.
Err, you are talking about repeats here,…
Comment: Yes .. BBMap can do that! - Part I : bbmap (aligner), bbduk (scan/trim), repair
by
GenoMax
149k
Only one tool from BBTools package is formally published: https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0185056
BBTool…
Comment: Help with CIBERSORTx Error in Single-Cell RNA-seq Analysis: Invalid 'times' Argu
by
GenoMax
149k
Please avoid posting screenshots of text data. You can copy/paste and then format the text as `code` using `101010` button in the editor wi…
Comment: Help with CIBERSORTx Error in Single-Cell RNA-seq Analysis: Invalid 'times' Argu
by
Pumla
•
0
This is the error i have: ![enter image description here][1]
and this is my data: ![enter image description here][2]
[1]: /medi…
Traffic: 2218 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6