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Comment: Addressing two nuisance factors in RNAseq
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Yes, that is what they're suggesting, as it is the simplest model for what you want (and makes the `RNA_extraction_day` and `library_prep_d…
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I used supervenn, makes a nice easy to read venn alternative
"https://github.com/gecko984/supervenn"
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Thanks, ATpoint. But I'm not sure if I understand your suggestion. Are you suggesting the following design?
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You have an extraction core? That's awesome.
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Equivalence of commands in the two modes is discussed in the first link above. Did you check that?
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Hi, thank you for the information, I already obtained my VCF file with the default filter, but I'm questioning the reliability of this defa…
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Hi, I'm using DRAGEN 4.2.7, which perform DRAGEN-ML, that's why the default filter is QUAL > 3. But I'm still wondering if this threshold i…
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Which DRAGEN version are you using? The filtering heavily depends on which DRAGEN version and commands you have used.
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DRAGEN uses an optimized version of GATK. See --> https://gatk.broadinstitute.org/hc/en-us/articles/4410456501915-Functional-equivalence-in…
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I've 12 normal samples. Thanks for the share
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Understood sir.
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Hi! [Transcript naming][1] is part of the [Ensembl gene annotation pipeline][2]. There will be further review for species [annotated both b…
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Do you have enough samples to create a private PON? GATK recommends a minimum of 40. If not you can use public 1000 genomes PON.
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You have to keep in mind that the portal you link only aggregates datasets for : **on Infectious and Immune-mediated Diseases (IID)**
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