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Recent Replies
Comment: Ggplot make boxplots more wide
by
zx8754
12k
Set colour to Day as well:
```R
ggplot( data = metadata, aes(x = location, y = gene, fill = Day, colour = Day)) + geom_boxplot()
```
To …
Comment: Transcript identification and quantification
by
dsull
★
7.5k
Ooh, that's a bit tricky. I worked with v3 of the kit a while back but for some reason I can only find the R2/R3 barcodes. I'll let you kno…
Comment: The Biostar Herald for Monday, May 05, 2025
by
cmdcolin
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BinSeq format from ArcInstitute also ! https://github.com/ArcInstitute/binseq ...the trio of binseq+xsra+https://github.com/ArcInstitute/SR…
Comment: Transcript identification and quantification
by
anton.avramov
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Thank you for your help. We’re using v3 chemistry—do you know where I can obtain the barcode sequences? I don’t believe Parse shares them d…
Comment: Transcript identification and quantification
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anton.avramov
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Thanks for the reply! I do use Parse pipeline to get expression matrices but what I really want to do is to be able to identify the transcr…
Comment: About FastP Tool
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Look at your alignment file records (with `samtools view` and such) and check the 6th field (`CIGAR` strings are described on page 8 in SAM…
Comment: Ggplot make boxplots more wide
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https://ggplot2.tidyverse.org/reference/geom_dotplot.html
Comment: Ggplot make boxplots more wide
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Nona
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How can I change it to a dot instead of a line?
Comment: Ggplot make boxplots more wide
by
Nona
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Yes its actually just one sample per location / day. Location is e.g. lung and liver and day is day 1,2,3 and gene is gene expression for …
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Hi @txemaheredia Did you find an answer? I'm having a similar problem with my own samples and I was wondering if its better to use HTOdemu…
Comment: Ggplot make boxplots more wide
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If you have 1 value for each location/day, you will get a line. Prefer just plotting a dot.
What is in `metadata` ?
Comment: Ggplot make boxplots more wide
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ATpoint
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If there is no interquartile range in the data then you cannot magically create it. Consider maybe `stat_summary(aes(color=Day), geom="line…
Comment: About FastP Tool
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AIMAR
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How can I check the CIGAR string.
And also do you have any idea about a genome browser I can use ?
Comment: Accessible color palettes for charts and dataviz
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Bastien Hervé
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That's a really nice touch for colorblind folks !
Some enhancements that would help for publications :
- Select a number of color (>5)
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