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There should be GRCh38 paths in the pggb graph. You can check the paths in the graph by extracting P or W lines:
> zcat <gfa.gz> | grep …
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> I tried HAC & SUP both did not work for me.
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hey, thank you for reply still i am getting same error.
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Thank you for replying and the tip! I tried HAC & SUP both did not work for me.
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That all makes sense! My best guess is something totally unexpected from somewhere else in the file and it's reporting the wrong line. (I…
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Have you tried PeptideCutter? https://web.expasy.org/peptide_cutter/
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Is there anyone that can help me?
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I've just added a [relevant comment there][1] in case anyone comes across the topic.
[1]: https://www.biostars.org/p/77372/#9611355
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