updated 1 hour ago by
GenoMax
150k
•
written 2 hours ago by
theresia.celine
•
0
0
votes
5
replies
98
views
0
votes
0
replies
64
views
3
votes
5
replies
130
views
0
votes
0
replies
50
views
5 hours ago by
Physalia-courses
★
2.6k
836
votes
167
replies
174k
views
111 follow
updated 11 days ago by
Biostar
3.5k
•
written 8.4 years ago by
Istvan Albert
102k
0
votes
1
reply
119
views
1
vote
3
replies
1.6k
views
1
vote
5
replies
992
views
updated 4 hours ago by
GenoMax
150k
•
written 3.1 years ago by
biology_inform
▴
50
6
votes
3
replies
863
views
updated 12 hours ago by
ehaag
▴
20
•
written 4.6 years ago by
rakinitopo
▴
10
0
votes
1
reply
225
views
0
votes
0
replies
69
views
0
votes
2
replies
133
views
updated 3 hours ago by
ATpoint
87k
•
written 20 hours ago by
leranwangcs
▴
150
1
vote
3
replies
614
views
2
votes
2
replies
139
views
updated 3 hours ago by
Jorge - Ensembl
▴
20
•
written 1 day ago by
gernophil
▴
120
5
votes
5
replies
259
views
0
votes
2
replies
126
views
2
votes
4
replies
215
views
1 day ago by
SomeOne
▴
170
0
votes
0
replies
85
views
1 day ago by
ylkim9
•
0
0
votes
1
reply
108
views
updated 1 day ago by
GenoMax
150k
•
written 1 day ago by
AlmuhayyaA
•
0
1
vote
3
replies
205
views
updated 8 hours ago by
ATpoint
87k
•
written 1 day ago by
pipelinfections
•
0
1
vote
0
replies
111
views
0
votes
3
replies
273
views
0
votes
1
reply
147
views
8
votes
18
replies
3.1k
views
8 follow
updated 1 day ago by
jena
▴
320
•
written 19 months ago by
fishingline37
•
0
1
vote
2
replies
206
views
updated 1 day ago by
dsull
★
7.4k
•
written 1 day ago by
marc.zimmerli
▴
10
0
votes
0
replies
120
views
2
votes
5
replies
599
views
1
vote
1
reply
176
views
1
vote
2
replies
196
views
0
votes
0
replies
115
views
2 days ago by
frarodmar17
•
0
0
votes
3
replies
385
views
1
vote
2
replies
219
views
1
vote
2
replies
265
views
2 days ago by
RJDan
•
0
0
votes
3
replies
810
views
4
votes
0
replies
202
views
0
votes
4
replies
280
views
0
votes
0
replies
222
views
1
vote
10
replies
890
views
updated 1 day ago by
Mensur Dlakic
★
29k
•
written 5 days ago by
Sib
▴
60
0
votes
0
replies
215
views
1
vote
1
reply
354
views
updated 3 days ago by
Michael
55k
•
written 6 days ago by
Chatchapon
•
0
1
vote
4
replies
448
views
updated 4 days ago by
Mensur Dlakic
★
29k
•
written 5 days ago by
vladimir_vinarsky
•
0
0
votes
2
replies
303
views
0
votes
4
replies
456
views
6 days ago by
Synanth
•
0
3
votes
2
replies
1.4k
views
updated 5 days ago by
Gordon Smyth
★
7.9k
•
written 3.2 years ago by
Assa Yeroslaviz
★
1.9k
0
votes
0
replies
269
views
6 days ago by
gagi1993
•
0
0
votes
1
reply
329
views
1
vote
2
replies
850
views
3
votes
2
replies
449
views
1
vote
3
replies
437
views
0
votes
0
replies
446
views
Recent Votes
Recent Locations •
All
Whitefish, MT, 1 minute ago
WCIP | Glasgow | UK, 1 minute ago
United States, 4 minutes ago
United Kingdom, 9 minutes ago
Texas, United States, 10 minutes ago
United States, 10 minutes ago
China, 27 minutes ago
Recent Awards •
All
Popular Question to
marongiu.luigi
▴
740
Popular Question to
lastpaulo
•
0
Popular Question to
leranwangcs
▴
150
Popular Question to
predeus
★
2.1k
Recent Replies
Comment: DRAGEN FILTER
by
GenoMax
150k
Equivalence of commands in the two modes is discussed in the first link above. Did you check that?
Comment: DRAGEN FILTER
by
theresia.celine
•
0
Hi, thank you for the information, I already obtained my VCF file with the default filter, but I'm questioning the reliability of this defa…
Comment: DRAGEN FILTER
by
theresia.celine
•
0
Hi, I'm using DRAGEN 4.2.7, which perform DRAGEN-ML, that's why the default filter is QUAL > 3. But I'm still wondering if this threshold i…
Comment: DRAGEN FILTER
by
DBScan
▴
480
Which DRAGEN version are you using? The filtering heavily depends on which DRAGEN version and commands you have used.
Comment: DRAGEN FILTER
by
GenoMax
150k
DRAGEN uses an optimized version of GATK. See --> https://gatk.broadinstitute.org/hc/en-us/articles/4410456501915-Functional-equivalence-in…
Comment: How to check normal BAM_files before create a Panel Of Normals (PoN)
by
AIMAR
•
0
I've 12 normal samples. Thanks for the share
Comment: How to check normal BAM_files before create a Panel Of Normals (PoN)
by
AIMAR
•
0
Understood sir.
Comment: Limma model gives weird results
by
ATpoint
87k
> However I got 0 significant contig.
That alone does not necessarily indicate a problem. There could in reality be non differences, or no…
Answer: Source for `transcript_name` in GTFs
by
Jorge - Ensembl
▴
20
Hi! [Transcript naming][1] is part of the [Ensembl gene annotation pipeline][2]. There will be further review for species [annotated both b…
Comment: How to check normal BAM_files before create a Panel Of Normals (PoN)
by
GenoMax
150k
Do you have enough samples to create a private PON? GATK recommends a minimum of 40. If not you can use public 1000 genomes PON.
https://g…
Comment: Rna-seq data
by
GenoMax
150k
You have to keep in mind that the portal you link only aggregates datasets for : **on Infectious and Immune-mediated Diseases (IID)**
Comment: How to check normal BAM_files before create a Panel Of Normals (PoN)
by
Pierre Lindenbaum
166k
> Please do not paste screenshots of plain text content, it is counterproductive. You can copy paste the content directly here (using the c…
Comment: How to check normal BAM_files before create a Panel Of Normals (PoN)
by
1769mkc
★
1.3k
add your command as text not as image
Comment: What is the best way to know if a pair of genes is random?
by
Ana
▴
10
Yes, but the results are not exciting... I appreciate your help though!
Comment: Is vg toolkit suitable for haplotype calling?
by
Pau
•
0
What I mean is: from a set of long reads and a pangenome with no haplotype paths (because it was built with unphased vcf) obtain the differ…
Traffic: 4188 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6