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Recent Replies
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I use the commamd `conda install perl==5.32.1 ` solve this problem
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Hello,
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Thanks for your response.
I think it may be better to keep those repetitive regions and only filter out the blacklisted regions.
This is a …
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IDR addresses a different problem than removal of reads aligning to blacklist reads, though it's unquestionably useful for deriving more ro…
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Simply posting a snippet of error message in a question is the reason you have not received any responses.
Please make an effort to formu…
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Based on the ordering of the commands here: https://github.com/pcingola/SnpEff/issues/583
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That's great to know. Thanks for your input!
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I am going to guess you've seen/thoroughly read [this paper about the ENCODE blacklist regions](https://www.nature.com/articles/s41598-019-…
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When you have a bam make sure you check the methyl tags MM and ML are present. Something like
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yes keeping both mapping info and methylation info at the same time is the intention. Thanks so much for the reosponse! I will try it
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> OP wants to align AND keep the methylation info
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