updated 1 hour ago by
Pierre Lindenbaum
165k
•
written 3 hours ago by
JustinZhang
▴
120
0
votes
1
reply
35
views
0
votes
1
reply
398
views
0
votes
1
reply
139
views
updated 19 hours ago by
Gordon Smyth
★
7.8k
•
written 1 day ago by
Apprentice
▴
170
1
vote
1
reply
237
views
4
votes
6
replies
359
views
835
votes
169
replies
172k
views
110 follow
updated 6 months ago by
Biostar
3.4k
•
written 8.3 years ago by
Istvan Albert
102k
1
vote
2
replies
146
views
3
votes
5
replies
252
views
updated 18 hours ago by
Billy Rowell
▴
500
•
written 1 day ago by
jahnreinhard.ringger
•
0
1
vote
12
replies
353
views
2
votes
2
replies
169
views
0
votes
0
replies
82
views
1 day ago by
Physalia-courses
★
2.6k
0
votes
2
replies
146
views
8
votes
4
replies
381
views
1
vote
9
replies
374
views
0
votes
0
replies
120
views
1
vote
3
replies
227
views
0
votes
1
reply
163
views
0
votes
0
replies
126
views
2 days ago by
karlensberg
•
0
0
votes
9
replies
420
views
updated 2 days ago by
Pierre Lindenbaum
165k
•
written 3 days ago by
totoroGirl
•
0
1
vote
1
reply
187
views
2 days ago by
Franck
•
0
0
votes
0
replies
112
views
5
votes
9
replies
469
views
updated 1 day ago by
colindaven
7.3k
•
written 3 days ago by
alexandrakortsi
•
0
5
votes
4
replies
258
views
0
votes
1
reply
344
views
updated 2 days ago by
Jouni Sirén
▴
630
•
written 7 days ago by
zhengluo
•
0
0
votes
0
replies
134
views
0
votes
2
replies
369
views
1
vote
8
replies
1.6k
views
6 follow
80
votes
32
replies
31k
views
18 follow
updated 1 day ago by
Paulo
▴
10
•
written 11.2 years ago by
Istvan Albert
102k
1
vote
4
replies
342
views
3 days ago by
dk7258859
•
0
0
votes
1
reply
225
views
updated 3 days ago by
i.sudbery
21k
•
written 3 days ago by
Alana Conceição Maia Lessa
•
0
0
votes
1
reply
247
views
updated 3 days ago by
colindaven
7.3k
•
written 3 days ago by
gulin
•
0
0
votes
6
replies
369
views
9 hours ago by
paulanavarrete116
•
0
2
votes
2
replies
317
views
8
votes
12
replies
533
views
0
votes
3
replies
264
views
0
votes
2
replies
259
views
1
vote
1
reply
198
views
0
votes
4
replies
291
views
1
vote
5
replies
490
views
1
vote
1
reply
217
views
2
votes
2
replies
368
views
updated 2 days ago by
lieven.sterck
15k
•
written 6 days ago by
Jl
•
0
1
vote
5
replies
336
views
updated 1 day ago by
Istvan Albert
102k
•
written 4 days ago by
Ana
•
0
0
votes
1
reply
218
views
updated 4 days ago by
lieven.sterck
15k
•
written 4 days ago by
Naila
•
0
1
vote
4
replies
293
views
4 days ago by
SomeOne
▴
170
1
vote
7
replies
391
views
updated 4 days ago by
yura.grabovska
▴
760
•
written 4 days ago by
zhang616123
•
0
0
votes
3
replies
290
views
updated 3 days ago by
Bastien Hervé
6.2k
•
written 4 days ago by
Jonathan Yoou
▴
70
0
votes
0
replies
183
views
4 days ago by
soledad.esteban
•
0
0
votes
4
replies
302
views
1
vote
14
replies
710
views
updated 4 days ago by
colindaven
7.3k
•
written 5 days ago by
ZuelTech
•
0
1
vote
4
replies
1.8k
views
updated 4 days ago by
swbarnes2
14k
•
written 6 days ago by
Wu-Sheng Zhang
•
0
Recent Votes
Recent Locations •
All
Machhagan, 34 minutes ago
United Kingdom, 42 minutes ago
Whitefish, MT, 47 minutes ago
United States, 47 minutes ago
India, 49 minutes ago
Portugal, 1 hour ago
São Paulo - Brazil - Unifesp, 1 hour ago
Recent Awards •
All
Popular Question to
Michael
55k
Good Answer to
Khader Shameer
18k
Teacher to
Billy Rowell
▴
500
Popular Question to
SushiRoll
▴
140
Popular Question to
Assa Yeroslaviz
★
1.9k
Great Question to
Manu Prestat
4.1k
Popular Question to
buffealo
▴
130
Recent Replies
Answer: Merge and unique multiple complete sam files from identical fastq files
by
Pierre Lindenbaum
165k
I wrote https://jvarkit.readthedocs.io/en/latest/SamRemoveDuplicatedNames/ this program just remove the duplicated name+flag but doesn't l…
Comment: miRNA-seq normalization
by
paulanavarrete116
•
0
I'm not sure about your question. The 3' adapters were removed in the first step of the workflow using miRDeep2 mapper which allows for rem…
Answer: Issues with T2T in pigeon prepare from isoseq
by
anbayega
•
0
Got the same error using T2T. I will wait to see if there's a quick fix.
Comment: Extract length of sample sequence from vcf
by
Billy Rowell
▴
500
If you don't want to mess with compiling bleeding-edge bcftools, you could write the same thing in awk. There's no need to filter out the …
Answer: How to obtain TPM data after batch effect correction from count data obtained us
by
Gordon Smyth
★
7.8k
I would be using divided counts for transcript-level analyses from RSEM, and using log-CPM from the divided counts for clustering, for the …
Answer: Missing short indels from vcf
by
LauferVA
4.7k
Hey @kbranger ,
IIUC, you have a ~7 bp deletion visible in IGV (with a 7D CIGAR string and ~17–20× depth) that disappears after bcftools…
Comment: Modify read groups in BAM file
by
1769mkc
★
1.2k
is this onboard or basespace or ICA? dragen
Comment: MultiQC_report
by
GenoMax
150k
That is pretty odd. Like you were advised above you could try to open an issue with the devs. I don't think I have ever seen this problem. …
Answer: Facing issue with output of nextflow pipeline
by
mmhryc
•
0
With nextflow you don't want to manage paths manually. Instead of creating a hardcoded path you should let it output the results into whate…
Answer: Choosing the best clustering method for a certain methylation data
by
5heikki
11k
[Affinity propagation][1] is the answer to all my clustering needs
[1]: https://utstat.toronto.edu/reid/sta414/frey-affinity.pdf
Comment: Modify read groups in BAM file
by
Alex
•
0
Thanks Istvan, this seems like a reasonable enough solution that could be scripted across large batches of files. I'll give it a shot. Was …
Comment: MultiQC_report
by
AIMAR
•
0
No I don't, when I said errors I mean it shows 267 samples for the adapter content while I just have 50 samples of paired-end read = 100 re…
Comment: MultiQC_report
by
GenoMax
150k
> in this report multiqc missed 3 samples (6 reports ) and still made the error with the adapter content.
Do you have any oddities in samp…
Answer: Extract length of sample sequence from vcf
by
Billy Rowell
▴
500
This is hacky and definitely not prod ready, but if the goal is to get the length and not the sequence, you could use bcftools/paste/bc to …
Comment: Extract length of sample sequence from vcf
by
LauferVA
4.7k
you probably want to be working wihta bam file for this ..
Traffic: 1502 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6