16 minutes ago by
Rafal
•
0
0
votes
0
replies
2
views
0
votes
0
replies
21
views
0
votes
0
replies
36
views
0
votes
3
replies
211
views
0
votes
1
reply
77
views
8
votes
18
replies
3.1k
views
8 follow
updated 12 hours ago by
jena
▴
320
•
written 19 months ago by
fishingline37
•
0
836
votes
167
replies
174k
views
111 follow
updated 10 days ago by
Biostar
3.5k
•
written 8.4 years ago by
Istvan Albert
102k
1
vote
2
replies
141
views
updated 15 hours ago by
dsull
★
7.4k
•
written 18 hours ago by
marc.zimmerli
▴
10
0
votes
0
replies
65
views
19 hours ago by
Tuấn Anh
•
0
2
votes
5
replies
526
views
1
vote
1
reply
134
views
1
vote
1
reply
113
views
updated 7 hours ago by
Jordan M Eizenga
▴
700
•
written 22 hours ago by
Pau
•
0
0
votes
0
replies
76
views
22 hours ago by
frarodmar17
•
0
0
votes
3
replies
339
views
1
vote
2
replies
174
views
1
vote
2
replies
218
views
1 day ago by
RJDan
•
0
0
votes
3
replies
768
views
4
votes
0
replies
153
views
0
votes
4
replies
225
views
0
votes
0
replies
169
views
1
vote
8
replies
687
views
0
votes
0
replies
173
views
1
vote
1
reply
310
views
updated 2 days ago by
Michael
55k
•
written 5 days ago by
Chatchapon
•
0
1
vote
4
replies
386
views
updated 3 days ago by
Mensur Dlakic
★
29k
•
written 4 days ago by
vladimir_vinarsky
•
0
0
votes
2
replies
257
views
0
votes
4
replies
400
views
4 days ago by
Synanth
•
0
3
votes
2
replies
1.3k
views
updated 4 days ago by
Gordon Smyth
★
7.9k
•
written 3.2 years ago by
Assa Yeroslaviz
★
1.9k
0
votes
0
replies
229
views
5 days ago by
gagi1993
•
0
0
votes
1
reply
284
views
1
vote
2
replies
809
views
3
votes
2
replies
405
views
1
vote
3
replies
393
views
0
votes
0
replies
393
views
0
votes
1
reply
277
views
updated 5 days ago by
GenoMax
150k
•
written 5 days ago by
pinheirofabiano
▴
110
0
votes
0
replies
1.4k
views
1
vote
3
replies
375
views
1
vote
3
replies
377
views
0
votes
5
replies
405
views
3
votes
2
replies
338
views
0
votes
0
replies
266
views
0
votes
1
reply
369
views
updated 6 days ago by
Istvan Albert
102k
•
written 7 days ago by
Eltercertopico
•
0
1
vote
4
replies
547
views
6 days ago by
Fatemeh
▴
40
1
vote
3
replies
424
views
1
vote
2
replies
368
views
0
votes
1
reply
344
views
9
votes
5
replies
631
views
6 follow
updated 2 days ago by
kalavattam
▴
350
•
written 7 days ago by
shelkmike
★
1.5k
1
vote
9
replies
775
views
0
votes
0
replies
267
views
0
votes
3
replies
398
views
1
vote
3
replies
418
views
Recent Votes
Recent Locations •
All
Galway, Ireland, 1 minute ago
United Arab Emirates, 8 minutes ago
Spain, 12 minutes ago
vietnam, 12 minutes ago
Bologna, 16 minutes ago
Hungary, 19 minutes ago
Denmark, 26 minutes ago
Recent Awards •
All
Popular Question to
sarahmanderni
▴
120
Popular Question to
doncheng1
•
0
Popular Question to
xiaoleiusc
▴
140
Teacher to
Zhenyu Zhang
★
1.3k
Popular Question to
pablo
▴
330
Recent Replies
Comment: How to convert and annotate apt-probeset-genotype into PLINK format
by
AlmuhayyaA
•
0
Hi Kevin,
where I can find Axiom.db for apt-format-result --calls-file calls.csv --annotation-file Axiom.db --export-plink-file new? I am …
Comment: How to convert and annotate apt-probeset-genotype into PLINK format
by
AlmuhayyaA
•
0
hi all, did you get the answer regrading where can we find Axiom.db?
Comment: Adapter content in FASTQ file
by
xiaoleiusc
▴
140
I just realized that the adapter sequence depends on the library preparation kit used. For example, our sequencing facility used the Illumi…
Comment: Galaxy + RStudio
by
swbarnes2
14k
Why wouldn't it be possible? The DESeq2 manual has a large section devoted to different ways of importing data in different formats; a plai…
Comment: Proper preprocessing for ML after limma, quantile normalization and log2 transfo
by
Sib
▴
60
**No, that’s not correct.** I carefully read your response multiple times (at least 10 times) before formulating my follow-up questions bas…
Comment: Transcript ID
by
Meeru
•
0
Yes, they’re the same. The “-0” is likely just an extra tag from a tool or database, not part of the official Ensembl ID.
Comment: Transcript ID
by
cheong
•
0
Hi ATpoinrt,
Thank you!
I saw this in the results generated by a software called flair (https://doi.org/10.1038/s41467-020-15171-6)
…
Comment: Is vg toolkit suitable for haplotype calling?
by
Jordan M Eizenga
▴
700
When you say "extract the haplotypes", are you referring to the read alignments themselves, or do you mean inferring the underlying haploty…
Answer: How to limit fasta header to 40 characters?
by
jena
▴
320
Looks like a job for [bioawk][1]. For example, if you just need the IDs (like in the seqkit answer above), you can do this:
bioawk -c …
Comment: Transcript level quantification and gene length scaling for rRNA depleted librar
by
dsull
★
7.4k
Haven’t had time to think about this in its entirety but lncRNAs are poorly annotated (in part because their biology is tricky) and TPM len…
Comment: Transcript level quantification and gene length scaling for rRNA depleted librar
by
ATpoint
87k
Interesting observation. Can you add plots to illustrate this? For example for this gene, the salmon output per samples, the tximport resul…
Comment: Proper preprocessing for ML after limma, quantile normalization and log2 transfo
by
Mensur Dlakic
★
29k
I have no good idea how to work with data of unknown origin and unknown pre-processing steps.
Somehow, you seem to be reading my answers s…
Comment: Proper preprocessing for ML after limma, quantile normalization and log2 transfo
by
Sib
▴
60
Unfortunately, I cannot use raw data because I am teaching students who are not yet able to analyze raw data. Instead, we use a series matr…
Answer: Small‑Lab Data Management & Analytics Tool – What are your biggest pain points?
by
Darked89
4.7k
I think the best is to strip functionalities to bare essentials: secure storage of the data plus metadata and the backups. For that you may…
Comment: Small‑Lab Data Management & Analytics Tool – What are your biggest pain points?
by
karl.stamm
4.1k
I've seen a few of these posts, and you seem to be highlighting that it is 'lightweight'. I think that's a bad move - what do you think th…
Traffic: 2328 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6