0
votes
0
replies
1
view
0
votes
0
replies
1
view
0
votes
0
replies
1
view
0
votes
0
replies
9
views
12 minutes ago by
Anton
•
0
0
votes
2
replies
37
views
0
votes
0
replies
21
views
0
votes
4
replies
126
views
10 minutes ago by
ramiro.barrantes
▴
50
1
vote
1
reply
60
views
0
votes
1
reply
47
views
0
votes
1
reply
56
views
1
vote
1
reply
110
views
838
votes
170
replies
179k
views
112 follow
updated 6 weeks ago by
Biostar
3.6k
•
written 8.5 years ago by
Istvan Albert
102k
0
votes
0
replies
52
views
0
votes
2
replies
78
views
1
vote
1
reply
232
views
updated 20 hours ago by
colindaven
7.6k
•
written 3 days ago by
emil.paulitz
•
0
0
votes
0
replies
74
views
0
votes
1
reply
127
views
0
votes
0
replies
126
views
0
votes
1
reply
460
views
0
votes
0
replies
130
views
2 days ago by
Physalia-courses
★
2.6k
0
votes
4
replies
2.0k
views
1
vote
0
replies
134
views
0
votes
1
reply
194
views
updated 2 days ago by
GenoMax
151k
•
written 2 days ago by
michael.dhar
•
0
2
votes
4
replies
837
views
0
votes
2
replies
267
views
0
votes
0
replies
167
views
8
votes
5
replies
369
views
updated 3 days ago by
GenoMax
151k
•
written 3 days ago by
sarahmanderni
▴
130
0
votes
0
replies
155
views
0
votes
1
reply
222
views
0
votes
0
replies
153
views
5
votes
4
replies
627
views
0
votes
1
reply
204
views
2
votes
2
replies
1.8k
views
4
votes
2
replies
270
views
2 days ago by
ATS
▴
10
1
vote
4
replies
287
views
0
votes
0
replies
177
views
4 days ago by
Physalia-courses
★
2.6k
0
votes
1
reply
217
views
updated 4 days ago by
ATpoint
88k
•
written 4 days ago by
radwa_noreen
•
0
0
votes
3
replies
334
views
0
votes
1
reply
250
views
4
votes
3
replies
391
views
updated 4 days ago by
colindaven
7.6k
•
written 5 days ago by
genomics_student
•
0
0
votes
1
reply
252
views
updated 4 days ago by
marco.barr
▴
170
•
written 4 days ago by
Kelly
•
0
2
votes
3
replies
637
views
4 days ago by
lijiangres
▴
20
0
votes
0
replies
220
views
4 days ago by
Gordon Smyth
★
8.1k
0
votes
0
replies
206
views
1
vote
3
replies
331
views
updated 4 days ago by
ATpoint
88k
•
written 4 days ago by
rajdeepboral00
▴
70
0
votes
1
reply
252
views
2
votes
8
replies
543
views
updated 4 days ago by
GenoMax
151k
•
written 6 days ago by
Luca Arbore
▴
10
1
vote
7
replies
2.5k
views
2
votes
2
replies
321
views
4 days ago by
Andrew
•
0
Recent Votes
Recent Locations •
All
Romania, 5 minutes ago
UK, 5 minutes ago
London, 5 minutes ago
Karolinska Institutet, Sweden, 6 minutes ago
United Kingdom, 10 minutes ago
France/Nantes/Institut du Thorax - INSERM UMR1087, 12 minutes ago
Italy, 13 minutes ago
Recent Awards •
All
Popular Question to
rbpdee
▴
50
Popular Question to
KABILAN
▴
130
Popular Question to
Luwell
•
0
Popular Question to
AIMAR
▴
10
Popular Question to
marongiu.luigi
▴
740
Scholar to
Mensur Dlakic
★
29k
Popular Question to
prasundutta87
▴
720
Recent Replies
Comment: How to deal with intermediate files
by
ramiro.barrantes
▴
50
Thank you!! I am aware of all of those, however, they are not exactly what I am looking for: I could transfer data from one place to anothe…
Comment: Best pairwise alignment for insertion and deletion-containing sequences
by
rbpdee
▴
50
Thanks, @patrickdm! Let me give it a shot.
Answer: Best pairwise alignment for insertion and deletion-containing sequences
by
patrickdm
▴
260
Hello, I'd try tweaking the [Affine Gap Scores][1] of Align.PairwiseAligner(), and if those are not good enough, consider the possibilty to…
Comment: How to deal with intermediate files
by
dthorbur
★
3.0k
Fair point about the sensitivity of data. I don't work on human or other particularly sensitive data so never really thought about it.
Comment: How to deal with intermediate files
by
GenoMax
151k
Great list. Globus may be the perfect option, if it is already installed on HPC.
Something to consider before using any of the above. Not…
Comment: phage sequence no alignment to genome
by
GenoMax
151k
> StrainA_genome.fasta
Is this a publicly available reference genome (preferably RefSeq version) for your organism (strain)? Have you comp…
Answer: How to deal with intermediate files
by
dthorbur
★
3.0k
There are a bunch of options, and I've seen a lot of different methods over the years. Here are a few of the common ones I've seen/used:
…
Answer: Quality control metrics in mmCIF
by
dthorbur
★
3.0k
There is a lot of useful information in the mmCIF file headers that can be relevant. Each method will have slightly different information a…
Comment: What to do after fastp?
by
dthorbur
★
3.0k
Please provide more information on what steps you have taken or which workflow you are using. Fastp is a common QC tool, but it's not manda…
Comment: What to do after fastp?
by
AIMAR
▴
10
Hi you can check this youtube video : [rna seq analysis][1]
Even that one as a introduction to RNA seq : [Introduction to RNA-seq][2]
Ho…
Comment: Mass-spectrometry proteomics
by
Nasim Gandomdoust
•
0
Thank you for your answer. I conducted an analysis using limpa and found it quite interesting. As far as I understand, both ON and CN model…
Answer: Mitochondrial Annotation Tool
by
patrickdm
▴
260
Hello, for the annotation you could try [Prokka][1] using the option --kingdom Mitochondria (--gcode 5).
Hth.
[1]: https://github.com/t…
Comment: How to generate identiy score between aligned sequences with Mauve?
by
Charles Plessy
★
2.9k
`.command.run: line 304: docker: command not found`: You need either to install the software by yourself, or to let Nextflow download them …
Answer: Assessing the difference between a de novo assembly and a reference genome
by
patrickdm
▴
260
Hello, you will find informations on dnadiff's output in its documentation's [README][1]; also notice that
For more information on t…
Comment: How to generate identiy score between aligned sequences with Mauve?
by
marongiu.luigi
▴
740
Yes, there was the `--target` parameter missing. I tried again, this time with a `samplesheet.csv` file containing only
```
sample, fasta
…
Traffic: 3073 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6