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So essentially you have two count matrixesand want to compare? Or just two samples and want to assess similarity? I don't see much alternat…
Comment: Which additional files are needed for the -taxids option in blast?
by
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Ok, so I was wrong about what `taxids` does. Thanks a lot for the clarification! I will try what you suggest, this sounds great.
Comment: Which additional files are needed for the -taxids option in blast?
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Thank you for the hint how to use the `-taxids` option to make few-species databases with `makeblastdb` and `blastdb_aliastool`. This might…
Comment: Which tools use or rely on the XA tag in SAM/BAM/CRAM files?
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Maarten
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I am unable to paste it here(complains about language), so I made a sniplet at https://pastebin.com/3sKa7i9c
Answer: Has anyone tried used simple ML models to identify virulence genes?
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If all the genes that are different from virulent and non-virulent strains were responsible for virulence, this would be a good approach. T…
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It's possible to replicate the indexing pipeline in `vg autoindex -w mpmap` by using `vg construct` to [make a graph][1], `vg rna` to [add …
Comment: How to keep the same view for different AlphaFold 3 simulations in ChimeraX?
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Thanks a lot for your answer !
Not so related but do you know how to export the PAE plot by command line ?
I usually open like this:
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I'm trying to match coordinates of methylation probes to the start-stop positions of genes, so alternative transcripts aren't really of int…
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Using the `taxids` option filters the BLAST search results, which come from entire database. That option does not pre-filter the BLAST data…
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@picasa - first, strictly speaking, @mensur is correct - there is no built-in, universal coordinate system shared by all structure files. S…
Comment: Which tools use or rely on the XA tag in SAM/BAM/CRAM files?
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> It is not about whether the data is online or not; it is about whether the XA tags will ever be needed or not
OP said that the data has …
Comment: Which additional files are needed for the -taxids option in blast?
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See previous topic [here][1]
[1]: https://www.biostars.org/p/200742/
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Dunois
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> Personal agency should be considered a basic human right.
It *is* a basic right, of not just humans, but all (at least) biological entit…
Comment: i dont know if its related to here or not but it can be very interesting discuss
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Your post is essentially off-topic.
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> What is the best way to open all my .cif files with the same point of view?
There is no way to do that, because there is no absolute c…
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