updated 2 hours ago by
colindaven
7.6k
•
written 3 days ago by
emil.paulitz
•
0
0
votes
1
reply
181
views
0
votes
0
replies
35
views
0
votes
0
replies
34
views
838
votes
170
replies
179k
views
112 follow
updated 5 weeks ago by
Biostar
3.6k
•
written 8.5 years ago by
Istvan Albert
102k
0
votes
1
reply
93
views
0
votes
0
replies
99
views
0
votes
1
reply
428
views
0
votes
0
replies
103
views
1 day ago by
Physalia-courses
★
2.6k
0
votes
4
replies
2.0k
views
1
vote
0
replies
110
views
0
votes
1
reply
163
views
updated 2 days ago by
GenoMax
151k
•
written 2 days ago by
michael.dhar
•
0
2
votes
4
replies
675
views
0
votes
2
replies
236
views
0
votes
0
replies
143
views
7
votes
5
replies
324
views
updated 2 days ago by
GenoMax
151k
•
written 2 days ago by
sarahmanderni
▴
130
0
votes
0
replies
130
views
0
votes
1
reply
187
views
0
votes
0
replies
130
views
5
votes
4
replies
602
views
0
votes
1
reply
179
views
2
votes
2
replies
1.8k
views
4
votes
2
replies
238
views
2 days ago by
ATS
▴
10
1
vote
4
replies
261
views
0
votes
0
replies
153
views
3 days ago by
Physalia-courses
★
2.6k
0
votes
1
reply
192
views
updated 3 days ago by
ATpoint
88k
•
written 3 days ago by
radwa_noreen
•
0
0
votes
3
replies
306
views
0
votes
1
reply
225
views
4
votes
3
replies
362
views
updated 3 days ago by
colindaven
7.6k
•
written 4 days ago by
genomics_student
•
0
0
votes
1
reply
226
views
updated 3 days ago by
marco.barr
▴
170
•
written 3 days ago by
Kelly
•
0
2
votes
3
replies
609
views
3 days ago by
lijiangres
▴
20
0
votes
0
replies
196
views
3 days ago by
Gordon Smyth
★
8.1k
0
votes
0
replies
183
views
1
vote
3
replies
305
views
updated 3 days ago by
ATpoint
88k
•
written 4 days ago by
rajdeepboral00
▴
70
0
votes
1
reply
229
views
2
votes
8
replies
514
views
updated 3 days ago by
GenoMax
151k
•
written 5 days ago by
Luca Arbore
▴
10
1
vote
7
replies
2.4k
views
2
votes
2
replies
294
views
4 days ago by
Andrew
•
0
1
vote
1
reply
214
views
0
votes
0
replies
195
views
4 days ago by
Physalia-courses
★
2.6k
1
vote
0
replies
233
views
0
votes
0
replies
196
views
4
votes
2
replies
278
views
12 hours ago by
marongiu.luigi
▴
740
0
votes
0
replies
205
views
updated 2 days ago by
colindaven
7.6k
•
written 4 days ago by
marongiu.luigi
▴
740
0
votes
0
replies
193
views
4 days ago by
this_is_me_trying
•
0
0
votes
3
replies
825
views
0
votes
3
replies
528
views
0
votes
1
reply
461
views
updated 4 days ago by
agis.maulana12
•
0
•
written 9 days ago by
Wenhai
•
0
3
votes
4
replies
409
views
updated 4 days ago by
GenoMax
151k
•
written 5 days ago by
anthony.santana.703.j
▴
30
1
vote
3
replies
388
views
updated 2 days ago by
LChart
5.0k
•
written 5 days ago by
ton_of_questions
•
0
7
votes
6
replies
444
views
updated 5 days ago by
colindaven
7.6k
•
written 5 days ago by
SomeOne
▴
180
Recent Locations •
All
France/Nantes/Institut du Thorax - INSERM UMR1087, just now
Istanbul, Turkey, 6 minutes ago
Vancouver, 8 minutes ago
London, United Kingdom, 21 minutes ago
United States, 26 minutes ago
United States, 27 minutes ago
London, 34 minutes ago
Recent Awards •
All
Popular Question to
prasundutta87
▴
720
Popular Question to
bn
▴
30
Popular Question to
Morris_Chair
▴
370
Popular Question to
andrea
•
0
Teacher to
poisonAlien
★
3.2k
Popular Question to
swbarnes2
15k
Popular Question to
Pierre Lindenbaum
166k
Recent Replies
Answer: SNP calling from multiple genomes: No valid SNPs
by
colindaven
7.6k
The typical SNP calling route is to run say 3 short read datasets (fastq input) against one reference genome. Then your approach would like…
Comment: Bioconductor scRNAseq tutorial constantly breaks down due to dependencies
by
GenoMax
151k
https://bioconductor.org/books/3.15/OSCA.intro/index.html is a comprehensive version of scRNAseq analysis. Installation of software would b…
Comment: How to generate identiy score between aligned sequences with Mauve?
by
GenoMax
151k
Usage section for the pipeline: https://nf-co.re/pairgenomealign/2.1.0/docs/usage/
You need to specify a "target" genome using the paramet…
Comment: How to generate identiy score between aligned sequences with Mauve?
by
marongiu.luigi
▴
740
I finally got access to a more powerful machine, but this time I got the error:
```
$ ~/src/Nextflow/nextflow run nf-core/pairgenomealign …
Answer: HOMER findMotifsGenome.pl failed compilation
by
文杰
•
0
I use the commamd `conda install perl==5.32.1 ` solve this problem
Comment: normalize between 2 different platform
by
linqy
▴
10
Hello,
Could you please tell me whether different datesets generated by multiplex PCR and 5'UMI-tagged 5′-RACE can be analyzed together? T…
Comment: Discussions about QC of sc-multiomic-ATAC_RNA-seq from 10xgenomics platform in t
by
gynecoloji
•
0
Thanks for your response.
I think it may be better to keep those repetitive regions and only filter out the blacklisted regions.
This is a …
Comment: Discussions about QC of sc-multiomic-ATAC_RNA-seq from 10xgenomics platform in t
by
jared.andrews07
★
18k
IDR addresses a different problem than removal of reads aligning to blacklist reads, though it's unquestionably useful for deriving more ro…
Comment: Issue with Package installation in R.
by
GenoMax
151k
Simply posting a snippet of error message in a question is the reason you have not received any responses.
Please make an effort to formu…
Answer: Building database with snpEff -- -gtf22 option not recognized/file not read
by
michael.dhar
•
0
Based on the ordering of the commands here: https://github.com/pcingola/SnpEff/issues/583
I believe I just needed to place the "build" c…
Comment: WGCNA blockwiseModules function for small datasets
by
ATS
▴
10
That's great to know. Thanks for your input!
Answer: Discussions about QC of sc-multiomic-ATAC_RNA-seq from 10xgenomics platform in t
by
LChart
5.0k
It should be noted that concerns about mapping artifacts in ChIP-seq really come from an era where reads were 36bp (or even 25bp!) in lengt…
Comment: WGCNA pickSoftThreshold problem
by
LChart
5.0k
AGain you seem to be over-filtering. Your mean.k and median.k are really low, so I think the number of input genes you used for this is ver…
Answer: Discussions about QC of sc-multiomic-ATAC_RNA-seq from 10xgenomics platform in t
by
jared.andrews07
★
18k
I am going to guess you've seen/thoroughly read [this paper about the ENCODE blacklist regions](https://www.nature.com/articles/s41598-019-…
Traffic: 2142 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6